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  3. RAFL05-03-G20

RAFL05-03-G20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00823)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-G20 - full reading 
GTTAACGAAT CTCGTAAAAA AACCCAATGG CGCCTTCCTT ATCACCAATC 
AGATCACACC ACGTGGCAGT TATCGGCGCC GGAGCCGCCG GATTAGTCGC 
GGCGCGAGAG CTTCGTCGGG AAGGTCACTC GGTGGTCGTC TTCGAGAGAC 
AAAAACAAGT CGGAGGAACC TGGATTTACA CCGATCATAT TGAACCCGAT 
CCATTAAGCG TTGACCCGAC CCGATCCGTT GTTCATTCGA GCGTCTATGG 
ATCTCTCCGA ACTAATCTCC CCCGTGAGTG TATGGGATAC AGGGACTTCC 
CGTTCGTGAT TCGTTCCGAT GTATCGGAAT CTAGAGATCC GAGGAGGTTT 
CCGAGTCATG GTGAAGTTTT GGCGTATTTG CAAGATTTCG CTAAGGAGTT 
TGCGATTGAG GAGATGATTC GGTTTGATAC GGCGGTTGTG AAGGTTGCTC 
CGGCGGCGGA AGAAGGAAGC GGGAAATGGA GAATTGAATC TACGGAGAAA 
GAGAAGAAAG TTCTTCGTGA TGAGATTTAT GATGCTGTTG TTGTTTGTAA 
TGGACATTAC ATTGAACCTC GTCACGCTGA AATTCCTGGT ATAAGTTCTT 
GGCCAGGGAA GGAGATGCAT AGTCATAATT ATCGTATACC TGAACCGTTT 
AGAGATCAGG TTGTTGTGCT TATAGGGAAC TCTGCAAGTG CTGATGATAT 
AAGTAGGGAT ATTGCTAGAG TTGCCAAAGA GGTTCATGTG GCTTGTAGGT 
CCAATGCTGC TGATACGTAT ATTGAGCGGC CTGGTTACAG TAATCTATGG 
ATGCATTCGA TGATTGAGAG TGTCCATGAG GATGGTTCTG TAGTTTTTCA 
GAATGGGAAA ACGATTTCGG TTGATGTTAT TATGCATTGC ACTGGGTATA 
AGTATCACTT CCCGTTTCTT GAAACCAATG GAAATGTTAC TGTAGACGAT 
AACCGTGTCG GGCCATTGTA CAAAGACGTA TTCTCTCCAG CCTTTGCGCC 
GTGGCTCTCC TTCGTTGGGA TACCATGGAA GGTTGTACCT TTTCCTATGT 
TTGAACTGCA AAGCAAGTGG ATCGCTGGTG TTTTGTCGGG TCGGATACCG 
CTGCCTTCAA AGGAAGATAT GATGATGGAA ATCAAAACCT TATACTCAAC 
ACTTGATGCC CAAGGGATTG CAAAGCGATA TACTCACCAA ATGGGCATTT 
CTCAATTTGA GTACAATAGT TGGTTGGCTT CACAATGCGG TTGCTCAGAA 
ACAGAGGAAT GGAGGAAAGA GATGTATTTT GCAACGGGCG TGAAGAAGAG 
AGCCCATCCA GAGACGTATA GAGACGAATG GGATGATCAT CACTTAGTTT 
CTCAAGCTTA TCAAGATTTC TCTTTGTACA CATAAACAAA AAAACATATC 
TGAGAAAGTA AATTCAATGT TAATGCCAGT ACTGCCATTT ATTGGAAAAG 
ACATCATTCT TACC

Gene models with high sequence identity

  1. AT1G62600.1 [+] show detail - Flavin-binding monooxygenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 8.8e-96
HMMPanther DIMETHYLANILINE MONOOXYGENASE (FLAVIN-CONTAIN 2.1e-188
HMMPanther DIMETHYLANILINE MONOOXYGENASE 2.1e-188
FPrintScan Flavin-containing monooxygenase FMO 1.5e-21
FPrintScan Flavin-containing monooxygenase FMO 1.5e-21
FPrintScan Flavin-containing monooxygenase FMO 1.5e-21
FPrintScan Flavin-containing monooxygenase FMO 1.5e-21
FPrintScan Flavin-containing monooxygenase FMO 1.5e-21
superfamily FAD/NAD(P)-binding domain 6.6e-50
HMMPfam Flavin-containing monooxygenase-like 8.4e-38
HMMPfam Flavin-containing monooxygenase-like 7.4e-16

See the detailed result >

AT1G62600.1

Model type
Protein coding
Short Description
Flavin-binding monooxygenase family protein
Computational Description
Flavin-binding monooxygenase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G62620.1); Has 12942 Blast hits to 12462 proteins in 1657 species: Archae - 58; Bacteria - 6621; Metazoa - 1182; Fungi - 1403; Plants - 819; Viruses - 0; Other Eukaryotes - 2859 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-G20 introduced

  • F13835 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds