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RAFL05-03-H12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00743)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-H12 - full reading 
AAAAAAACTC TTAAACAGCT TCCTAACGAG AGGAAACTGA GGAACACAAC 
AATGGAGTTT CGTGGAGATG CCAACCAGAG GATTGCTAGG ATTTCAGCTC 
ATCTCACTCC TCAGATGGAG GCCAAGAACT CTGTAATCGG ACGGGAAAAC 
TGCAGAGCTA AAGGTGGTAA TCCAGGATTC AAAGTAGCAA TTCTTGGAGC 
TGCAGGTGGA ATTGGACAAT CTTTATCTTT GCTGATGAAG ATGAACCCTC 
TTGTCTCTTT ACTTCATCTC TACGATGTTG TCAATGCTCC TGGCGTCACT 
GCTGACGTCA GTCATATGGA CACTGGAGCT GTTGTCCGCG GGTTCTTGGG 
AGCGAAGCAG CTTGAGGACG CGCTAACGGG TATGGATCTT GTGATCATAC 
CAGCCGGTAT ACCGAGGAAA CCAGGGATGA CCCGCGATGA TCTGTTTAAA 
ATCAATGCTG GGATTGTTAA AACACTATGT GAAGGTGTAG CAAAATGTTG 
TCCTAATGCT ATTGTCAACT TGATCAGCAA CCCTGTGAAC TCTACTGTCC 
CCATTGCCGC TGAGGTTTTC AAGAAAGCTG GAACTTATGA TCCTAAGAAG 
CTCCTTGGAG TTACTACACT CGATGTTGCT CGTGCCAACA CATTTGTGGC 
AGAAGTTCTT GGCCTTGATC CAAGAGAAGT CGATGTGCCA GTAGTTGGGG 
GACACGCCGG AGTCACAATC TTGCCACTAC TGTCACAGGT TAAACCTCCT 
AGCAGCTTCA CACCTCAAGA AATTGAGTAC CTGACAAACC GGATTCAAAA 
TGGTGGAACT GAAGTTGTGG AGGCAAAAGC TGGAGCTGGT TCTGCAACAC 
TTTCAATGGC ATATGCTGCA GCCAAGTTTG CAGATGCTTG CCTTCGCGGG 
TTAAGAGGAG ATGCGAATGT CGTAGAATGC TCTTTTGTTG CTTCACAGGT 
GACAGAATTA GCTTTCTTTG CAACAAAAGT GCGCCTTGGC CGTACAGGAG 
CAGAGGAAGT GTATCAGCTT GGACCCTTAA ACGAATACGA AAGGATTGGT 
CTGGAGAAAG CAAAAGATGA ATTAGCCGGA AGTATTCAGA AAGGTGTTGA 
ATTCATCAGA AAATGAAACT GAGAGATAAT CAGAGAGATA CAATAAGTTA 
TTTCCTCAAC TATATGATCA TGTACTCATC ATCACATCAT GCCTATGTCT 
CCTCTGCTTC TGATACAACT TTGTATAAAT CCTTATCAGT TTGTGTACGA 
TATATGTGAC CC

Gene models with high sequence identity

  1. AT5G09660.1 [+] show detail - peroxisomal NAD-malate dehydrogenase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria 9e-176
HMMPIR L-lactate/malate dehydrogenase 2.9e-55
Gene3D NAD(P)-binding domain 3.3e-41
Gene3D Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 2.6e-59
superfamily Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 2.7e-54
superfamily NAD(P)-binding domain 9e-41
PatternScan Malate dehydrogenase, active site 0
HMMPfam Lactate/malate dehydrogenase, C-terminal 3.7e-49
HMMPfam Lactate/malate dehydrogenase, N-terminal 2e-47
HMMPanther Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria 8.1e-195
HMMPanther MALATE AND LACTATE DEHYDROGENASE 8.1e-195

See the detailed result >

AT5G09660.1

Model type
Protein coding
Short Description
peroxisomal NAD-malate dehydrogenase 2
Curator Summary
encodes a microbody NAD-dependent malate dehydrogenase encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description
peroxisomal NAD-malate dehydrogenase 2 (PMDH2); FUNCTIONS IN: malate dehydrogenase activity; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 1 (TAIR:AT2G22780.1); Has 17070 Blast hits to 17068 proteins in 5416 species: Archae - 235; Bacteria - 12016; Metazoa - 1211; Fungi - 533; Plants - 741; Viruses - 0; Other Eukaryotes - 2334 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-H12 introduced

  • F02612 - Specific phenotypes were NOT observed.
  • F06726 - Specific phenotypes were NOT observed.
  • F07016 - Specific phenotypes were NOT observed.
  • F10031 - Specific phenotypes were NOT observed.
  • F13633 - Specific phenotypes were NOT observed.
  • F16718 - Specific phenotypes were NOT observed.
  • F18942 - Specific phenotypes were NOT observed.
  • F23144 - Specific phenotypes were NOT observed.
  • F29147 - Specific phenotypes were NOT observed.
  • F30334 - Specific phenotypes were NOT observed.
  • F30428 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found