1. Home
  2. Full-length cDNAs
  3. RAFL05-03-I04

RAFL05-03-I04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02429)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-I04 - full reading 
GAGTTTTCTT TATCCCCAAA AAACCCTAAA CTCTTCTTCT CGCCGACTTC 
TCTACTCCTT TCCAGAAACC AAGTTTCAGG TCATCGGTGA AATTTGTTGT 
GTTCCCGGCG ACTTCTACTT TTCACCTTTC TTCTCGGCGT CGTCTAATTT 
CTAGGGTTCC CCTGTATTTC ACCGTCAAGA GCAAATCCAA CATGTCGTCG 
CTGCGTAATG CTATTCCACG GCCTGCTCAT AAGGAGCGAT CTCAACCGGA 
AGCGAGGAAG AGGTTTGGCA TCCTCGAGAA GCATAAGGAT TATATTATCC 
GAGCTAATGC TTATCACAAA AAGCAGGAAA CTTTAAAGAT ACTTAGGCAG 
AAGGCTGCAT TCAAGAATCC AGATGAATTC AACTTTAAGA TGATTAATAG 
TAAAACAGTT GATGGACGTC ATAGACCAAA AGATGAGGTA AATAAATACT 
CTGCGGAAGA GCTTATGATT ATGAAGACTC AAGATATTGG ATATGTGTTC 
CAAAAATGGC AGAGTGAGAA AAACAAAATT GACAAGCTGA CTGCATCGCT 
GCAATGTACT GGGGATCAGT CAAGCCGTAG ACATGTTTAC TATGCAGAAG 
ACAGAGAGGA GGCTAGAGAA CTGGAGGTAC AAGGTAGAAG CAAAAGTGAT 
ATCTCTACAG TAGAGATTCC GAAAGATATT AAAAAGAAAA TGGATAGGTC 
CTATAGAGAC CTCGAGGGGC GGAAGAGCAG GGCTAAAGAT TTGGAGAAGT 
TATACACGGA TATGTCAATG CAGAAGGAGT TACAGAAAAA GGGTCGCAAA 
CGGAAGCTGC GTGATGACGA GCTGCTCAAT CCAAATGGTA AAGCGGTATA 
CAAATGGCGC GCCGATAGAA AACGCTGAAG AGAAAAGCTT TCATGGTTGT 
GTAGCTTGAC ATCATTTTTC TGATCTCTAT TAAAGTTTAT ATAGCAGGCA 
GTTTTATTAT AGTTTTTTTG ATCTCCAGAA CCTGCAGAAC TTTACATACA 
ATTTTGGATG GGACAATATC TGTTTACTTT AAGCTCTTTG TTGCGTATCT 
GGAAAAGTTT TACTAATGTG ATTGACGAAA TATAAAC

Gene models with high sequence identity

  1. AT3G60360.1 [+] show detail - embryo sac development arrest 14
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Small-subunit processome, Utp11 8.2e-79
HMMPfam Small-subunit processome, Utp11 1.7e-60
HMMPIR Small-subunit processome, Utp11 1.9e-129

See the detailed result >

AT3G60360.1

Model type
Protein coding
Short Description
embryo sac development arrest 14
Computational Description
EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-I04 introduced

  • F01139 - seed::increased size / seed::increased length / seed::decreased width
  • F19042 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found