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RAFL05-03-J07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02430)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-J07 - full reading 
ATCCTCTCCG TCCTCTGTTC TTCTCATTGG CCGCCATGGT GAAGTACTCT 
CAAGAGCCCG ATAATATCAC CAAATCTTGC AAGGCGAGAG GAGCCGATCT 
CAGGGTCCAC TTCAAGAACA CTAGAGAAAC AGCGCACGCC ATAAGGAAGC 
TACCATTGAA CAAGGCCAAA AGGTACTTGG AAGATGTCAT AGCTCACAAG 
CAAGCTATCC CCTTCACCCG TTTCTGTCGT GGTGTTGGTC GTACCGCTCA 
GGCAAAGAAC AGGCATTCGA ACGGACAAGG TCGCTGGCCT GCTAAATCTG 
CTCAATTCGT TCTTGATCTT CTCAAGAATG CTGAGAGCAA TGCTGAGGTC 
AAAGGTTTGG ATGTCGATGC CCTTTTCATT TCTCACATCC AAGTGAACCA 
AGCAGCAAAA CAGAGGAGAA GGACATATCG TGCTCATGGA AGAATCAATC 
CTTACATGTC AAACCCATGC CACATTGAGT TGATTTTGTC AGAGAAAGAA 
GAGCCTGTGA AGAAAGAGCC GGAGACACAG TTGGCAGCAA AGTCAAAGAA 
AGGAGCCTCA TCTTAAGCTA TAACATAGAC AGTCTATTTG TGCTCACTTG 
TGTTACCCTT AATACTTTTT GTTAGCTTCT CTCTATAAGA CCAATACTCA 
ATTTTTAAGT ATGATGATTA TCGGTTTTTG GATTGCTGAA AGAATCTCTC 
TTTATCCTTG GTATTGATAG ATGAATAACT CATAGTAAAA TCTTGAAATA 
TGTTTTAGAG ATGGATC

Gene models with high sequence identity

  1. AT1G27400.1 [+] show detail - Ribosomal protein L22p/L17e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribosomal protein L22/L17 1.4e-56
Gene3D Ribosomal protein L22/L17 5.8e-57
HMMTigr Ribosomal protein L22/L17, eukaryotic/archaeal 1.4e-84
PatternScan Ribosomal protein L22/L17, conserved site 0
HMMPfam Ribosomal protein L22/L17 4.1e-34
HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER SLC34A 0.000047
HMMPanther SODIUM-DEPENDENT PHOSPHATE TRANSPORTER-RELATE 0.000047
HMMPanther Ribosomal protein L22/L17, eukaryotic/archaeal 1.8e-114

See the detailed result >

AT1G27400.1

Model type
Protein coding
Short Description
Ribosomal protein L22p/L17e family protein
Computational Description
Ribosomal protein L22p/L17e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22/L17 (InterPro:IPR001063), Ribosomal protein L22/L17, eukaryotic/archaeal (InterPro:IPR005721), Ribosomal protein L22/L17, conserved site (InterPro:IPR018260); BEST Arabidopsis thaliana protein match is: Ribosomal protein L22p/L17e family protein (TAIR:AT1G67430.1); Has 2094 Blast hits to 2094 proteins in 650 species: Archae - 321; Bacteria - 492; Metazoa - 519; Fungi - 182; Plants - 156; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-J07 introduced

  • F00318 - Specific phenotypes were NOT observed.
  • F00351 - Specific phenotypes were NOT observed.
  • F05912 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / rosette leaf::decreased size / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / stem::abnormal
  • F11224 - Specific phenotypes were NOT observed.
  • F12440 - Specific phenotypes were NOT observed.
  • F13544 - seed::increased size / seed::increased length
  • F19808 - seed::increased size
  • F20323 - Specific phenotypes were NOT observed.
  • F23213 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / whole plant::decreased height / stem::abnormal / stem internode::decreased length
  • F29030 - Specific phenotypes were NOT observed.
  • F29106 - seed::increased length

Mutant lines with disrupted or induced

15 mutant lines found