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  3. RAFL05-03-L01

RAFL05-03-L01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02431)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-L01 - full reading 
GCACTCTTCT TCTTCCCTGT CGCCGCATCA AAGAGAACTG AAGCAATAGG 
CTTTTGAAGC TCTCTGCATA AACATGACTT TCAAGCGCAG GAATGGTGGC 
AGGAACAAGC ATAACCGTGG TCATGTGAAA CCAATCAGGT GTTCCAACTG 
TGGAAAGTGT TGCCCCAAGG ACAAGGCGAT TAAGAGATTT ATCGTAAGGA 
ACATTGTTGA GCAGGCTGCT ATTAGAGATG TTCAAGAAGC TAGCGTCTAC 
GAAGGTTACA CTCTCCCAAA GCTTTACGCT AAGACGCAGT ACTGTGTCTC 
GTGTGCTATC CATTCTCACG TTGTGAGAGT CCGATCCCGC ACCAACCGTA 
GAGTTCGTAC CCCACCACCT CGTTTTGCCA GACGCAAGGA GGATACACCC 
AAGCCTGCAC AACCTGGTCA GGCTCCTCGC CCTGCCGGTG GTGCTCCTGC 
TGCTCCTCGT GCCTGAAGAC TTCAAGAAGC TGGCAATCCG AAACTTCTTA 
TATTCTAGTT TCAATCTCTC TTTTGTCTGA AATTTTTGAA GATGTTTTCT 
ACATTTTGTT AAAGATGATT TCGCCATATT GGAGCTTTAA ACGTTTCAGA 
CC

Gene models with high sequence identity

  1. AT3G56340.1 [+] show detail - Ribosomal protein S26e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein S26e 2e-53
HMMPanther Ribosomal protein S26e 2.2e-92
PatternScan Ribosomal protein S26e 0

See the detailed result >

AT3G56340.1

Model type
Protein coding
Short Description
Ribosomal protein S26e family protein
Computational Description
Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40510.1); Has 761 Blast hits to 761 proteins in 271 species: Archae - 53; Bacteria - 0; Metazoa - 311; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-L01 introduced

  • F05349 - Specific phenotypes were NOT observed.
  • F05403 - Specific phenotypes were NOT observed.
  • F07335 - Specific phenotypes were NOT observed.
  • F25547 - stem::increased thickness / stem::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

7 mutant lines found