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  3. RAFL05-03-O18

RAFL05-03-O18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00856)

full reading [+] show sequence

Nucleotide sequence: RAFL05-03-O18 - full reading 
GCTTTTCAAT CTTCGTCTAT CTGTCTCCAC GATCCACGCC TTGACCTTCG 
TTTTTTTTTT CTCAGAGATT AGAGAAAACT CCGATAACCA ATTTCTCAAT 
CTTTTTGTAG ATCCAATTTT TCCAGGAAAA AAAGAGGTTT CGCGAAGAAG 
ATGAGTTTTC AAGATTTAGA ATCAGGAAGA GGAAGATCAA CGAGGAAATT 
CAATGGTGGT CGACAAGATT CGACACAAGC CGTTGCTTCT GGAATATTCC 
AGATCAATAC CGGAGTCTCC ACGTTTCAGC GACTCGTTAA CACACTTGGT 
ACTCCCAAAG ATACACCGGA GCTCCGGGAG AAGCTGCACA AGACAAGGTT 
GCATATTGGA CAGCTTGTGA AGGATACTTC AGCTAAACTT AAAGAAGCTA 
GTGAAACTGA TCATCAAAGC GGTGTCAATC CAAGTAAGAA GATTGCAGAT 
GCTAAGCTTG CAAGGGACTT TCAAGCTGTT TTAAAAGAGT TTCAGAAAGC 
TCAACAAACT GCTGCTGAAA GAGAAACCAC TTATACTCCT TTCGTGCCTC 
AATCTGCTCT TCCCTCTAGC TATACGGCGG GTGAGGTGGA TAAGGTACCG 
GAACAGCGGG CACAACTTCA GGAGTCGAAA AGACAAGAAC TTGTATTGTT 
AGACAACGAG ATTGCATTCA ACGAGGCTGT GATTGAAGAA AGAGAGCAAG 
GAATACAAGA AATCCATCAG CAAATTGGTG AGGTTAACGA GATATTCAAA 
GATCTTGCGG TTCTGGTTAA CGATCAAGGA GTCATGATAG ATGATATTGG 
TACTCACATT GACAACTCCC GTGCTGCAAC TTCACAAGGA AAATCTCAGC 
TTGTGCAAGC CGCGAAAACA CAAAAATCAA ACTCCTCTCT GACATGCTTG 
CTCTTGGTGA TATTTGGCAT TGTTCTCCTG ATCGTGATTA TAGTACTCGC 
AGCTTGATTT CGAACAGCAA GAACATTTCG TTTGTGTGTG TTCATTGATC 
TTAAGGCATC AATGACTGGA ACTACTTGGT ATATATTATA TGTTGAAGAG 
AACACTTAGA AGTTGGTTTT GTGTTTGTTT GGGTTGGTTC AGTTCGGTTT 
GAGGTTCTAT TGGTTAATGT AATAGTGTGT GCGTGTGTGG CTTTTTTGTT 
GTGCAAACAT TTTGTTGGAG ATGACAGAAA CTCTGTTTTG TTTGTGATTC 
TCCTATGTTC TCCTAAATCT TTGTTGAGAG GAAACAAAAA CTATTTGCTC 
G

Gene models with high sequence identity

  1. AT5G46860.1 [+] show detail - Syntaxin/t-SNARE family protein
    E-value: 0; Score: 100.00

AT5G46860.1

Model type
Protein coding
Short Description
Syntaxin/t-SNARE family protein
Curator Summary
Syntaxin-related protein required for vacuolar assembly. A member of t-SNARE superfamily, homologous to yest Vam3p. Localized in the vacuolar membranes. The protein has a heptad repeat structure (residues164
Computational Description
VACUOLAR MORPHOLOGY 3 (VAM3); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: late endosome, trans-Golgi network transport vesicle, plant-type vacuole membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 23 (TAIR:AT4G17730.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-03-O18 introduced

  • F28816 - rosette leaf::dark green / stem::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem internode::decreased length / rosette leaf::dark green / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found