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  3. RAFL05-04-B21

RAFL05-04-B21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00860)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-B21 - full reading 
TGACACAAAA CAAAAATCGA CCAAAGAGTA ACCAAATTGA TATTTATCTC 
TTCTCAACCA TGGCGATGAG ACAAGCCGCT AAGGCAACGA TCAGGGCCTG 
TTCTTCCTCT TCTTCTTCGG GTTACTTCGC TCGACGTCAG TTTAATGCAT 
CTTCTGGTGA TAGCAAAAAG ATTGTAGGAG TTTTCTACAA GGCCAACGAA 
TACGCTACCA AGAACCCTAA CTTCCTTGGC TGCGTCGAGA ATGCCTTAGG 
AATCCGTGAC TGGCTTGAAT CCCAAGGACA TCAGTACATC GTCACTGATG 
ACAAGGAAGG CCCTGATTGC GAACTTGAGA AACATATCCC GGATCTTCAC 
GTCCTAATCT CCACTCCCTT CCACCCGGCG TATGTAACTG CTGAAAGAAT 
CAAGAAAGCC AAAAACTTGA AGCTTCTCCT CACAGCTGGT ATTGGCTCGG 
ATCATATTGA TCTCCAGGCA GCTGCAGCTG CTGGCCTGAC GGTTGCTGAA 
GTCACGGGAA GCAACGTGGT CTCAGTGGCA GAAGATGAGC TCATGAGAAT 
CTTAATCCTC ATGCGCAACT TCGTACCAGG GTACAACCAG GTCGTCAAAG 
GCGAGTGGAA CGTCGCGGGC ATTGCGTACA GAGCTTATGA TCTTGAAGGG 
AAGACGATAG GAACCGTGGG AGCTGGAAGA ATCGGAAAGC TTTTGCTGCA 
GCGGTTGAAA CCATTCGGGT GTAACTTGTT GTACCATGAC AGGCTTCAGA 
TGGCACCAGA GCTGGAGAAA GAGACTGGAG CTAAGTTCGT TGAGGATCTG 
AATGAAATGC TCCCTAAATG TGACGTTATA GTCATCAACA TGCCTCTCAC 
GGAGAAGACA AGAGGAATGT TCAACAAAGA GTTGATAGGG AAATTGAAGA 
AAGGCGTTTT GATAGTGAAC AACGCAAGAG GAGCCATCAT GGAGAGGCAA 
GCAGTGGTGG ATGCGGTGGA GAGTGGACAC ATTGGAGGGT ACAGCGGAGA 
CGTTTGGGAC CCACAGCCAG CTCCTAAGGA CCATCCATGG CGTTACATGC 
CTAACCAGGC TATGACCCCT CATACCTCCG GCACCACCAT TGACGCTCAG 
CTACGGTATG CGGCGGGGAC GAAAGACATG TTGGAGAGAT ACTTCAAGGG 
AGAAGACTTC CCTACTGAGA ATTACATCGT CAAGGACGGT GAACTTGCTC 
CTCAGTACCG GTAAGCTTTT GAGGAGGTGA CATTGGGAAG ATGATGAGAA 
ACGACCCCAA CGTTCAAGAA AACAAATAAA GAAGTATTTG GACTTTGCTA 
AGTCGAATGA CTTGAGTCAT CTTTTGGTTT AGTTTTTGTT ATTATATAAG 
CACAATAATA ATAGGAGGGC ACTTCCCCTG TTCTGAGAGT TTGTGAACAT 
ATTACTCAGT GGTTTAAATC ACACATATGT ATTTGTTTCC CCG

Gene models with high sequence identity

  1. AT5G14780.1 [+] show detail - formate dehydrogenase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily NAD(P)-binding domain 1e-54
superfamily Formate/glycerate dehydrogenase catalytic dom 3.4e-50
superfamily Formate/glycerate dehydrogenase catalytic dom 0.00021
Gene3D NAD(P)-binding domain 2.3e-56
Gene3D NAD(P)-binding domain 0.0005
PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
PatternScan D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 0
HMMPanther FORMATE DEHYDROGENASE 5.5e-239
HMMPanther 2-HYDROXYACID DEHYDROGENASE 5.5e-239
HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 7.2e-52
HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 1.1e-16

See the detailed result >

AT5G14780.1

Model type
Protein coding
Short Description
formate dehydrogenase
Curator Summary
Encodes a NAD-dependent formate dehydrogenase.
Computational Description
formate dehydrogenase (FDH); FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: response to cadmium ion, response to wounding; LOCATED IN: thylakoid, mitochondrion, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT1G17745.1); Has 28984 Blast hits to 28977 proteins in 2707 species: Archae - 468; Bacteria - 17844; Metazoa - 730; Fungi - 1196; Plants - 566; Viruses - 5; Other Eukaryotes - 8175 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-B21 introduced

  • F15722 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found