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RAFL05-04-C09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00865)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-C09 - full reading 
TCTTCTAATC CTAGCCGTTG CTTGTTTCGT CTCGCTAATC TCACCGGCGA 
TTTCACAACA GGCTTGCAAA TCACAGAACT TGAACTCCGC CGGTCCGTTC 
GATAGTTGCG AAGACCTTCC GGTACTCAAT TCCTACCTCC ATTACACCTA 
CAATTCCTCA AATTCATCTC TCTCCGTCGC TTTCGTCGCC ACTCCATCTC 
AAGCCAACGG TGGCTGGGTC GCTTGGGCTA TTAACCCTAC GGGGACTAAG 
ATGGCTGGTT CTCAAGCCTT CCTCGCTTAC AGATCCGGCG GTGGTGCGGC 
TCCGGTCGTG AAGACGTACA ACATTAGCAG CTACAGCAGT CTCGTCGAAG 
GTAAACTTGC TTTTGATTTT TGGAATCTAC GCGCCGAGTC GTTAAGCGGC 
GGTAGGATCG CCATTTTCAC GACGGTTAAG GTTCCGGCGG GAGCTGATAG 
TGTGAATCAG GTATGGCAGA TCGGCGGCAA TGTTACCAAC GGTCGTCCCG 
GTGTACATCC TTTCGGTCCT GATAATTTGG GCTCCCACCG TGTGTTGAGT 
TTCACAGAAG ATGCAGCACC GGGCTCTGCT CCTTCGCCGG GATCTGCTCC 
GGCGCCGGGC ACCAGTGGCT CGACTACCCC AGGAACAGCG GCGGGAGGTC 
CAGGGAACGC GGGGTCATTG ACGAGGAACG TAAATTTTGG GGTCAATTTG 
GGAATTTTGG TTTTGTTGGG TTCTATTTTT ATTTTCTGAA TGGGGATCTC 
TCTCTAGTCT CTCTTCTCTT CTTGAGTCTC TCTCTATTTT TTTTTTTTTT 
GGTTTGTTCG AACAATAATG GTGCCCCATA CTTTTGTACT GTTTTAGTCT 
TAGGGCCATT TACTTTGTTT CACCACATAC TTAGAGTTAT TGGATTGTAT 
GGACCATTAC TATCATGAGA TTGAGATCAT CTTATCTTCT C

Gene models with high sequence identity

  1. AT3G07390.1 [+] show detail - auxin-responsive family protein
    E-value: 0; Score: 99.79

 

InterPro Scan Digest

Program Description E-value
ProfileScan DOMON related 17.329
HMMSmart DOMON related 5.3e-32
HMMPfam Protein of unknown function DUF568, DOMON-like 9.5e-32

See the detailed result >

AT3G07390.1

Model type
Protein coding
Short Description
auxin-responsive family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational Description
Auxin-Induced in Root cultures 12 (AIR12); FUNCTIONS IN: extracellular matrix structural constituent; INVOLVED IN: response to auxin stimulus, lateral root morphogenesis, extracellular matrix organization; LOCATED IN: extracellular region, anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT3G25290.2); Has 254 Blast hits to 254 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-C09 introduced

  • F21624 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found