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  3. RAFL05-04-C24

RAFL05-04-C24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00827)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-C24 - full reading 
GGATAACCCT CAAGAAGAAG CTGCTGAAGA AGAAACCTCA TCCTTCGAAC 
GTTAAGAGGA AGAAGAATAA GAGAAATCGA TTCGTGGTTT TGGGAAAATT 
CAATGGCGGT TTCTACTGTA TCGTCGTTTC TATTGCCATC TTTCGGCATT 
CCAAGCTCTT CGCCTTCTTC TACCAGACTC AAAGTCTCTC TGCTGCCTTC 
ATCTTCTACC CATGGCGGCC TTAGTTCCTG CGTCCTTACG AAACCATCCG 
TCTCGCTTAC GAAGGTCTTC GCTGTTCCCG ATACCCTAGA TCCAACTCCA 
GAAATTCTCG ATGAACCCGC CTCTGAGGTT CCGAGCTCTT CATCCATCAG 
TGTAGACGCG GATAAGATGG CGCCAAAGCA AAAGATTAGG ATCAAGCTTA 
GATCATACTG GGTGCCTCTT ATTGAGGACT CATGCAAGCA GATACTTGAT 
GCTGCGAGAA ACACCAATGC AAAGACGATG GGTCCTGTTC CATTGCCAAC 
CAAGAAGCGT ATCTACTGTG TTCTCAAGTC TCCTCACGTT CACAAGGATG 
CTAGGTTCCA TTTTGAAATC CGGACACACC AGCGCATGAT TGATATTCTC 
TACCCGACTG CTCAAACTAT CGATTCTTTG ATGCAACTTG ATCTTCCTGC 
TGGTGTCGAT GTGGAAGTGA AGCTCTGAAG AAGAAGCGTA ACTACAATGA 
TGTGATGGGC ACTTTTGCAT TGAATGAACA GACTGTTTCA GATCAACTAC 
ATTGCTTAGA ACTGGTAAGC CTTGTATCAT CTTTTTTGAG AACCTTTGTA 
ACGAAAATGT AAGTTGTATT ATCTGGTCCT TGGAATCTAT CTTTAGCGAT 
GCTTGGTTCT TAGTTGATGA ACATATCCTT AATTAAGCAA GTTCAAAGGA 
ATTTGTTTTT GTTTTACTAA TTGTTATAC

Gene models with high sequence identity

  1. AT3G13120.1 [+] show detail - Ribosomal protein S10p/S20e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Ribosomal protein S10 subgroup 1.4e-59
HMMPanther Ribosomal protein S10 1.4e-59
PatternScan Ribosomal protein S10, conserved site 0
Gene3D Ribosomal protein S10 3.6e-34
FPrintScan Ribosomal protein S10 0.000000000000014
FPrintScan Ribosomal protein S10 0.000000000000014
FPrintScan Ribosomal protein S10 0.000000000000014
HMMTigr Ribosomal protein S10 subgroup 3.7e-59
HAMAP Ribosomal protein S10 subgroup 26.115
superfamily Ribosomal protein S10 2.4e-33
HMMPfam Ribosomal protein S10 1.4e-35

See the detailed result >

AT3G13120.1

Model type
Protein coding
Short Description
Ribosomal protein S10p/S20e family protein
Computational Description
Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10 subgroup (InterPro:IPR005731), Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10 (InterPro:IPR001848); Has 8443 Blast hits to 8443 proteins in 2902 species: Archae - 264; Bacteria - 5393; Metazoa - 337; Fungi - 182; Plants - 190; Viruses - 0; Other Eukaryotes - 2077 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-C24 introduced

  • F08350 - Specific phenotypes were NOT observed.
  • F10013 - Specific phenotypes were NOT observed.
  • F15515 - Specific phenotypes were NOT observed.
  • F16822 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / cauline leaf::epinastic / whole plant::decreased height / sporophyte vegetative stage::decreased speed
  • F26445 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found