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  3. RAFL05-04-F24

RAFL05-04-F24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00835)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-F24 - full reading 
AACAAAGCAA AGCGTTGAAG AGAGAAGAAG AAGCAAAGAT ATAACCCCCA 
AAAGTATCAA TTAGTTTCCA TTTTCGCCGC TAAGATTCTG TTTTCGAACA 
TTTACACCCT CAAGAATCGC CGCCATGTGT GGAGGAGCTA TAATATCCGA 
TTTCATTCCA CCGCCGAGGT CTCGCCGTGT TACTAGCGAG TTTATTTGGC 
CGGATCTGAA GAAGAATTTG AAAGGATCGA AGAAAAGCTC GAAGAATCGT 
TCGAATTTCT TCGATTTTGA CGCTGAGTTC GAAGCTGATT TCCAAGGTTT 
CAAAGATGAT TCGTCTATCG ATTGCGATGA TGATTTCGAC GTCGGTGATG 
TTTTCGCCGA TGTGAAACCA TTCGTTTTCA CTTCGACTCC AAAACCCGCC 
GTCTCCGCCG CTGCGGAAGG TTCAGTTTTT GGTAAGAAAG TTACTGGCTT 
GGATGGGGAC GCTGAGAAAT CTGCAAATAG GAAGAGGAAG AATCAGTACC 
GAGGGATTAG GCAACGTCCT TGGGGAAAAT GGGCTGCTGA GATACGTGAT 
CCAAGGGAAG GTGCTAGAAT CTGGCTTGGA ACGTTCAAGA CAGCTGAGGA 
AGCTGCTAGA GCTTACGATG CTGCAGCGCG GAGAATCCGT GGATCTAAAG 
CTAAGGTGAA TTTCCCTGAA GAAAACATGA AGGCTAATTC TCAGAAACGC 
TCTGTGAAGG CTAATCTTCA GAAACCAGTG GCTAAACCTA ACCCTAACCC 
AAGTCCAGCT TTGGTTCAGA ACTCGAACAT CTCCTTTGAA AATATGTGTT 
TCATGGAGGA GAAACACCAA GTGAGCAACA ACAACAACAA CCAGTTTGGG 
ATGACAAACT CCGTTGATGC TGGATGTAAT GGGTATCAGT ATTTCAGCTC 
TGACCAGGGT AGTAATTCTT TCGATTGTTC GGAGTTTGGT TGGAGCGATC 
AAGCTCCGAT AACTCCCGAC ATCTCTTCTG CGGTTATCAA CAACAACAAC 
TCAGCTCTGT TCTTTGAGGA AGCCAATCCA GCTAAGAAGC TCAAGTCTAT 
GGATTTCGAG ACACCTTACA ACAACACTGA ATGGGACGCT TCACTGGATT 
TCCTCAACGA AGATGCTGTA ACGACTCAGG ACAATGGTGC AAACCCTATG 
GACCTATGGA GTATTGATGA AATTCATTCC ATGATTGGAG GAGTCTTCTG 
AAGAGATCCA GTTTCATGTA AATAAGGCTG CATGTTTGTG AGTTTCCCGC 
ATCGTTCGTT TATCAACCTC CAAAACTTTC TAATGTCTGT TACTTGCATC 
TTCTTCTGCT GTCTCTGTCT GTCTCTCTCA GGAGTTCCTG TTTGCATTGC 
GAGAAGCCAT GAGCCTCTAT CTTGAGGGTA GTTGTGATGA AGTTAAGTAG 
AGGCTTATTT TTAGGGGTTG TGGTAGTTTT TGTTTTAGTG AATCTTTTGA 
ATTCGTTTGT GTTTTGTTTT TGTTACTTTA TGCCCCAAAA CTCCTTTAAC 
ATTTGTCATA ATGTGTTTGA ACCTCTCATC TGTTTAATCA AATAAATCTT 
CTTTGTATGT T

Gene models with high sequence identity

  1. AT1G53910.1 [+] show detail - related to AP2 12
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.3e-17
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.1e-37
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 5.4e-24
superfamily DNA-binding, integrase-type 2e-24
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 24.395
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-11
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-11

See the detailed result >

AT1G53910.1

Model type
Protein coding
Short Description
related to AP2 12
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
related to AP2 12 (RAP2.12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 2 (TAIR:AT3G14230.3); Has 6179 Blast hits to 5848 proteins in 260 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 6129; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-F24 introduced

  • F08816 - Specific phenotypes were NOT observed.
  • F16630 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found