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  3. RAFL05-04-H06

RAFL05-04-H06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02441)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-H06 - full reading 
GCCGTCTCTT AGAATCACAT CCACGTCGTC GTCTCCATAC CCATGGCTAC 
TCTTTTAGCC ACTCCTATCT TCTCTCCTTT AGCTTCTTCT CCAGCAAGGA 
ACCGTCTTTC TTGCTCTAAG ATCCGTTTCG GTTCCAAAAA TGGGAAAATT 
CTCAATTCTG ATGGTGCCCA GAAGTTGAAT CTCTCAAAAT TCCGTAAACC 
CGATGGCCAA AGATTTCTAC AAATGGGTTC TTCTAAAGAG ATGAACTTTG 
AGAGAAAACT CTCAGTCCAA GCTATGGATG GTGCAGGAAC AGGAAACACA 
TCAACGATCT CTCGTAACGT AATTGCGATA AGTCACTTGT TGGTATCACT 
TGGGATCATT CTTGCTGCAG ACTATTTCTT GAAGCAGGCG TTTGTAGCAG 
CGTCTATTAA GTTCCCAAGT GCTTTGTTTG GGATGTTCTG TATTTTCTCT 
GTTCTTATGA TATTTGATTC GGTTGTTCCT GCTGCTGCAA ATGGTTTGAT 
GAATTTCTTC GAGCCTGCGT TTCTGTTTAT CCAAAGATGG CTTCCTTTGT 
TCTATGTTCC TTCTCTTGTT GTTCTTCCTC TTTCTGTTAG AGATATTCCG 
GCTGCTTCAG GTGTCAAAAT CTGCTACATT GTAGCCGGTG GATGGTTGGC 
GTCACTTTGT GTAGCAGGGT ACACAGCTAT TGCAGTGAGA AAAATGGTGA 
AAACCGAAAT GACGGAAGCC GAGCCTATGG CAAAACCATC ACCATTTTCA 
ACACTTGAGC TATGGAGTTG GAGTGGAATC TTTGTTGTGT CGTTTGTTGG 
TGCTCTGTTT TACCCTAATT CATTGGGGAC AAGTGCAAGA ACTTCTCTCC 
CTTTCCTTCT TTCTTCAACT GTGCTAGGTT ACATTGTAGG TTCTGGGTTG 
CCATCTTCTA TTAAGAAAGT TTTCCATCCG ATAATCTGCT GCGCGCTATC 
TGCAGTACTT GCTGCTCTAG CTTTTGGGTA TGCTTCAGGA TCTGGACTTG 
ATCCTGTTTT AGGAAACTAC CTTACCAAAG TAGCATCAGA TCCTGGTGCT 
GGTGACATCT TAATGGGTTT TCTTGGCTCT GTCATTCTCT CTTTCGCTTT 
CTCCATGTTC AAACAAAGAA AGCTCGTGAA GAGGCACGCA GCTGAGATCT 
TCACATCTGT GATAGTTTCA ACGGTATTCT CGCTCTACTC CACTGCTCTT 
GTTGGACGTT TAGTCGGTTT AGAACCTTCT TTAACGGTTT CAATCCTACC 
TCGCTGCATC ACGGTTGCAT TGGCCCTTAG CATTGTATCA CTCTTTGAAG 
GGACCAATTC GTCTCTTACA GCAGCTGTAG TCGTTGTGAC TGGTCTGATT 
GGAGCTAACT TTGTACAAGT TGTTCTTGAC AAACTGCGTT TACGTGATCC 
AATTGCTCGG GGAATTGCAA CTGCTTCAAG TGCTCATGGA CTTGGAACAG 
CAGCTTTGTC GGCTAAGGAG CCAGAGGCTC TTCCCTTTTG TGCAATAGCT 
TATGCTCTTA CCGGAATCTT CGGATCGTTA CTGTGTTCTG TTCCTGCCGT 
CCGACAGAGT TTGCTAGCGG TCGTCGGCTG AGGATTGATG ATGTGGCGAA 
ACACGATTGA TGGTCTCAAA GCTGGCGAGT TACTTAAAAT ATGAGAGCAG 
TTTGCTTTGG ATGTCAAATA AGCTTGTATT AATGAAAAAG ATGATGGAAA 
ATGTTTATTT ATTTTATTTT ATATATGC

Gene models with high sequence identity

  1. AT1G32080.1 [+] show detail - membrane protein, putative
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam LrgB-like protein 1.4e-33

See the detailed result >

AT1G32080.1

Model type
Protein coding
Short Description
membrane protein, putative
Computational Description
membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 3603 Blast hits to 3592 proteins in 1271 species: Archae - 22; Bacteria - 3356; Metazoa - 0; Fungi - 58; Plants - 57; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-H06 introduced

  • F30511 - stem::present in fewer numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

11 mutant lines found