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  3. RAFL05-04-I05

RAFL05-04-I05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00753)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-I05 - full reading 
ACTCCAATCA CATCACTGCT AAGACTCATT GAATTCAAAT CGTTATGTCT 
ACACATTCAT CAATCTCGCA ACCGCCGCTT CCTCTCGCCG GAAGAGTCGC 
CATTGTCACC GGCTCTTCCC GTGGTATTGG CCGAGCGATA GCGATCCACT 
TAGCTGAACT CGGTGCGAGG ATTGTTATCA ACTACACCTC TAAAGCCGCA 
GACGCCGAGC GTGTCGCGTC GGAGATCAAT GATTTTCCAG TTAGGGAAGA 
AATCACTGGA AAGGGACCAA GAGCTATTGT GGTTCAGGCC AATGTCTCTG 
AGCCAAGCCA GGTTAAATCA ATGTTTGACG CGGCGGAGAG TGCCTTTGAA 
GCGCCGGTTC ACATTCTGGT TAACTCTGCT GGGATTCTCG ATCCAAAGTA 
CCCTACGATC AGACACATCA GTCGAAGATT TCGATCATAC GTTCAGTGTC 
AACACAAAAG GAGCGTTCCT GTGTAGCAAG GAAGCTGCCA ATAGGCTAAA 
ACAAGGAGGT GGTGGTCGGA TCATACTTCT GACATCTTCC CAGACTCGAT 
CTTTAAAGCC AGGGTTTGGT GCCTATGCCG CATCAAAGGC AGCTGTGGAA 
ACTATGGTCA AGATTCTTGC AAAAGAGCTC AAAGGAACAG GAATCACTGC 
AAACTGTGTT GCTCCAGGAC CCATCGCCAC TGAGATGTTC TTTGATGGAA 
AGACCCCAGA GTTGGTGGAA AAGATAGCCG CAGAGTCTCC CTTTGGGAGG 
GTCGGCGAAG CCAAAGACGT GGTGCCTCTT GTTGGATTCT TGGCTGGTGA 
CGGTGGTGAA TGGGTCAATG GTCAAATCAT TCCTGTTAAT GGTGGATATG 
TATAAAAGAG TTCGTCTTGA GAGGAGCCTC TTCCTGATAC CTTGAGAAGC 
AAATGTAGGG GTTAACTTGT TAGAAATAAA ACATTGGGTT CAATTGGAAT 
AATAATAATA ATAAACACTG AGGTTGAAAA T

Gene models with high sequence identity

  1. AT3G03980.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 99.69

 

InterPro Scan Digest

Program Description E-value
superfamily NAD(P)-binding domain 2.1e-43
superfamily NAD(P)-binding domain 9.3e-26
PatternScan Short-chain dehydrogenase/reductase, conserved site 0
Gene3D NAD(P)-binding domain 2.1e-41
Gene3D NAD(P)-binding domain 3.1e-24
FPrintScan Glucose/ribitol dehydrogenase 1.6e-20
FPrintScan Glucose/ribitol dehydrogenase 1.6e-20
FPrintScan Glucose/ribitol dehydrogenase 1.6e-20
FPrintScan Glucose/ribitol dehydrogenase 1.6e-20
FPrintScan Glucose/ribitol dehydrogenase 1.3e-08
FPrintScan Glucose/ribitol dehydrogenase 1.3e-08
HMMPanther 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE-RE 2.5e-72
HMMPanther Short-chain dehydrogenase/reductase SDR 2.5e-72
HMMPanther 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE-RE 2.6e-40
HMMPanther Short-chain dehydrogenase/reductase SDR 2.6e-40
HMMPfam Short-chain dehydrogenase/reductase SDR 1.2e-09
HMMPfam Short-chain dehydrogenase/reductase SDR 2.3e-16

See the detailed result >

AT3G03980.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G04000.1); Has 125329 Blast hits to 125098 proteins in 3700 species: Archae - 987; Bacteria - 82672; Metazoa - 6160; Fungi - 6506; Plants - 2912; Viruses - 12; Other Eukaryotes - 26080 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-I05 introduced

  • F05727 - Specific phenotypes were NOT observed.
  • F26750 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found