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RAFL05-04-I18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02444)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-I18 - full reading 
AGCTTAGCTT TCTGGTTTTT CTTCTTCTGC ACCTTAAATA TACGCCCAGA 
AAATTCCTCT GGTCACCAAA CCAAACCAAA ACCGACTCTT TCTTTGAATT 
TCTGAAAGGA AACGATAAGG GTTTCGAGAA AAATCATTCC TTTTTGACTT 
AAAAGACGCG TTTCCACATT TTTGGCGTTT CTTCTCTGGG TTTGTTTTGT 
CTCTAGACGA AGACGATCAC GGGTTTTAAC ATATTCGTGT GTACGCGTGT 
ATCTCCAATT TTGCGAATAG GGTTTGAAGT AATCGTTTTG TTTGTGAGGA 
TAACGACTCG CGGGGTTACG CATAGCAGGT TCCTGGCTTC TCTACTGTCA 
GGAGGGGCCT TGAGTCTTTG GAGTTACCAC AGTAGACAGA ACCCCAGTGG 
GTGACTTTTT GAAAAGTCTT CTTGATTTAG TGCTGCACAT TTTCGCTGTG 
GAGCTACAAT CAGAATATTA GAGAAGATAT GGGAATCTTT TCACGCAGTT 
CAATTAGTAG GAAATCAAAA GATGGAATGA AGATCATTGC AACGGCATTT 
TTTGGAGTAA CATTTGGCTT TCTGATTGGA ATATCTTTTC CATCATTATC 
AATCACTAAG GTGAGTCTCC CTACAAACTT TCTTCCTTCA AACGATCTCT 
CATATATCGA GGAAAAGGGT TCGAAAATTG CAACTCCAGA AAGTCATAAA 
GCTTGGTCAT CATCAAAGGG TAACGATAGC AGCTCATCTA CTCCGATTGA 
CAAATCAAAG ATCTGGGTAC CTTCTAATCC TCGTGGTGCT GAAATGTTGC 
CACCGGGTAT GGTTGCTGCT GAATCAGACT TCTATTTGCG CAGATTATGG 
GGTTTACCGC ATGAGGATTT GAAAAGTGAA CCAAGATACC TCGCAACATT 
TACAGTGGGT ATTAATCAGA AAGCAAATAT CGATGCTTGT GTCAAGAAGT 
TTTCAGAAAA CTTCACTATT GTCCTGTTTC ACTATGACGG CCGGGTAACT 
GAGTGGGATG AGTTTGAATG GTCAAAGACT GCTATACACA TTAGCGTACG 
AAAGCAGACA AAATGGTGGT ATGCAAAGAG GTTTTTGCAC CCTGATATTG 
TAGCAAGATA TGATTATATC TTCGTCTGGG ATGAAGACCT GGGTGTCGAG 
CATTTTAACG CAGAAGAGTA CGTAAAGATG GTGAAGAAGC ACGGCCTGGA 
GATTTCCCAA CCTGGCTTGG AACCAAACCA GGGACTAACG TGGCAAATGA 
CAAAGAGACG AGGAGATATG GAAGTTCACA AGATAACAGA AGAAAGACCT 
GGATGGTGCT CAGATCCTCA TCTCCCTCCA TGTGCTGCAT TCGTAGAGAT 
CATGGCTCCT GTATTTTCAA GAAATGCCTG GCGATGCGTG TGGCATGTGA 
TCCAGAATGA TTTGGTACAC GGTTGGGGTC TTGACTTTGC ACTCAGAAGA 
TGTGTTGAGC CTGCACATGA GAAGATAGGA GTAGTTGATT CTCAATGGGT 
CGTTCATCAA TCTTTTCCTT CCCTTGGCAA CCAAGGTGAG GCGACAGACG 
GGAAAGCACC ATGGCAAGGG GTGAGGGATA GATGCAAAAA GGAATGGACA 
ATGTTCCAGA GTAGAATGGC TAACGCAGAG AAGGATTATT TCAAATCCTT 
ACAAGTAGAA GGCTCCTCAA ATTCAACAGC CACAACCATT TAATAGGAGA 
GTTCTTAAAG TAGCTAGACG CTGACAGATT CAGTTTTACT AGTGCGTTCT 
TGCATTTACA TATAGAGTCT GTATATGTTA ATGTAGTAGA TATTACCCAT 
CACTACAAAA TCATCACCAA CCTTCCATCG AATAAACAAA AAAAGATGAA 
TGTTTTGAAC CGCC

Gene models with high sequence identity

  1. AT1G67850.1 [+] show detail - Protein of unknown function (DUF707)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G67850.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF707)
Computational Description
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G13000.2); Has 324 Blast hits to 323 proteins in 26 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-I18 introduced

  • F03706 - seed::increased width
  • F07034 - Specific phenotypes were NOT observed.
  • F16706 - seed::increased size / seed::increased length
  • F22138 - Specific phenotypes were NOT observed.
  • F22317 - Specific phenotypes were NOT observed.
  • F24108 - seed::increased length
  • F24731 - Specific phenotypes were NOT observed.
  • F25445 - Specific phenotypes were NOT observed.
  • F25446 - Specific phenotypes were NOT observed.
  • F28807 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

15 mutant lines found