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RAFL05-04-J20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07246)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-J20 - full reading 
ATATCCAACA ACAAAAACAT AAGCTAAGAA AACGAAACTC AACTAATTTT 
GTTATCACCC AAAAAGAAGT TCAAACACAA TGGCTTTCGC TTTGAGGTTC 
TTCACATGCC TTGTTTTAAC GGTGTGCATA GTTGCATCAG TCGATGCTGC 
AATCTCATGT GGCACAGTGG CAGGTAGCTT GGCTCCATGT GCAACCTATC 
TATCAAAAGG TGGGTTGGTG CCACCTTCAT GTTGTGCAGG AGTCAAAACT 
TTGAACAGTA TGGCTAAAAC CACACCAGAC CGCCAACAAG CTTGCAGATG 
CATCCAGTCC ACTGCGAAGA GCATTTCTGG TCTCAACCCA AGTCTAGCCT 
CTGGCCTTCC TGGAAAGTGC GGTGTTAGCA TTCCATATCC AATCTCCATG 
AGCACTAACT GCAACAACAT CAAGTGAAAT GGAAGCTTAC GTCGTCGTTT 
TGGCGTTAAG AGTATGGTTT ACCAGAAGTA CTAGAATAAA ATACGGCTAT 
ATATCTTAGC TGATATTACC ATGTATTTGT TTTTGTCTCA ATGCTTTGTC 
TTATTTTCAT ATCATATGTT GTATTGATGT GCTAAAACTA TGATAATAGT 
ACCTTATTAG CC

Gene models with high sequence identity

  1. AT5G59320.1 [+] show detail - lipid transfer protein 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.0000000000000074
HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.0000000069
FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
FPrintScan Plant lipid transfer protein/Par allergen 1.6e-28
Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 1.1e-32
PatternScan Plant lipid transfer protein/Par allergen 0
superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 8.3e-33

See the detailed result >

AT5G59320.1

Model type
Protein coding
Short Description
lipid transfer protein 3
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational Description
lipid transfer protein 3 (LTP3); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 4 (TAIR:AT5G59310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-J20 introduced

  • F02342 - Specific phenotypes were NOT observed.
  • F03141 - Specific phenotypes were NOT observed.
  • F04116 - Specific phenotypes were NOT observed.
  • F12051 - Specific phenotypes were NOT observed.
  • F14843 - seed::increased size / seed::increased length
  • F26518 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found