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RAFL05-04-M03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00836)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-M03 - full reading 
CCCACTTTTC CTTTGAGAAA ACTCAAAACA AAGTAAACAA ACAAACCAGA 
AAAAGGAATG GCACTGAGAA TGTGGGCTTC CTCTACAGCA AATGCTCTCA 
AGCTCTCTTC TTCTGCCTCC AAATCTCATC TCTTGCCAGC TTTCTCCATC 
TCCAGATGCT TCTCCTCAGT GTTGGAAGGA CTTAAGTATG CAAATTCACA 
TGAGTGGGTG AAACATGAAG GCTCAGTTGC TACAATTGGT ATCACTGACC 
ATGCGCAGGA CCATTTAGGA GAAGTTGTGT TTGTGGAGCT GCCTGAAGCA 
AACAGTTCAG TGAGCAAAGA AAAAAGCTTT GGAGCTGTTG AGAGTGTTAA 
GGCCACAAGT GAGATTCTAT CTCCAATCTC TGGTGAAGTC ATTGAGGTTA 
ACACAAAGCT CACCGAGTCA CCTGGTTTGA TCAACTCAAG CCCTTATGAA 
GATGGTTGGA TGATAAAGGT GAAACCGAGC AGCCCCGCGG AGTTGGAAGC 
TCTGATGGGT CCAAAGGAAT ACACCAAGTT CTGCGAAGAA GAAGACGCTG 
CTCACTAGGG TTTCTTCGCC TTTTATCTTT CCCAAATGTT CGAAAAACAG 
AGCAAAACAA GAGAATCCAT GCTTTAGTTT CAATCTTTCA TTTCTCAATG 
TTTCTTACCA CTCTCAACTT GTATCAGTGT GATACTAATT TGATTAAAAG 
ATCATCCAAT GAGACAC

Gene models with high sequence identity

  1. AT1G32470.1 [+] show detail - Single hybrid motif superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0
HAMAP Glycine cleavage H-protein 27.688
HMMTigr Glycine cleavage H-protein, subgroup 2.5e-58
superfamily Single hybrid motif 2.3e-47
HMMPfam Glycine cleavage H-protein 5.7e-50
Gene3D no description 7.8e-47
HMMPanther Glycine cleavage H-protein 4.5e-67

See the detailed result >

AT1G32470.1

Model type
Protein coding
Short Description
Single hybrid motif superfamily protein
Computational Description
Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: glycine decarboxylase complex H (TAIR:AT2G35370.1); Has 7097 Blast hits to 7097 proteins in 2175 species: Archae - 168; Bacteria - 4510; Metazoa - 187; Fungi - 126; Plants - 207; Viruses - 0; Other Eukaryotes - 1899 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-M03 introduced

  • F06436 - seed::increased size / seed::increased length
  • F06631 - Specific phenotypes were NOT observed.
  • F07308 - Specific phenotypes were NOT observed.
  • F07616 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found