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  3. RAFL05-04-M23

RAFL05-04-M23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00853)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-M23 - full reading 
ATCTTCTTCC TCATCTTTCT TCTCTCTTCA ACATTTTCTT CTCTTCTTCA 
CACAAACACA CACAGATCTC TTCTTCATCA CATTACTTCT GGCTTTACAT 
CTTTTTTCTT CTCCATGAGG AAAGGGAGAG GCTCTTCCGT CGTTGGACCC 
GCCCTTCCAG TAACCGCCGG TGGATCTGTG AAGGAGCCGA GGTATAGAGG 
CGTTAGGAAG AGACCTTGGG GTCGATTCGC AGCTGAGATC CGTGATCCAT 
TAAAAAAATC TCGTGTCTGG CTCGGTACTT TCGATTCCGC CGTAGATGCT 
GCACGCGCTT ACGATACCGC CGCACGTAAC CTCCGTGGTC CAAAGGCCAA 
GACCAATTTC CCGATCGATT GTTCTCCTTC TTCTCCTCTC CAACCTCTCA 
CCTACCTCCA CAATCAAAAC CTCTGTTCTC CTCCGGTGAT TCAGAACCAG 
ATCGATCCGT TTATGGACCA TCGGTTATAC GGCGGAGGTA ATTTCCAGGA 
GCAGCAGCAG CAGCAGATTA TTAGTCGGCC GGCGAGTAGC AGCATGAGCA 
GCACCGTTAA ATCTTGTAGC GGACCGAGAC CGATGGAAGC CGCGGCGGCG 
TCTTCGTCGG TGGCGAAACC GTTACATGCG ATTAAGAGAT ATCCGAGAAC 
TCCACCGGTA GCTCCGGAGG ATTGTCATAG CGACTGCGAT TCTTCGTCGT 
CTGTTATTGA CGACGGAGAT GATATCGCAT CTTCGTCTTC CCGCCGGAAA 
ACGCCGTTTC AGTTTGATCT TAATTTCCCG CCGTTGGATG GCGTTGACTT 
ATTCGCTGGC GGGATAGATG ATCTCCACTG TACCGATCTA CGTCTCTGAT 
TTGCTGCTTT ACAAAAAAAA TCCGTTGATT ACACACAAAA AAAATTCTCA 
AATTTTACAA AATGATAACT TTATGCTCTT TTGTTTTTCC ATTTTCCTTT 
GATATCATAT TGAAAGAGAA AAAAAGGAAG AACAAAAAAA AAAGATTGAG 
CGTGATGATT TTATCATCAA CGAAGATGAT GACGATTAAA AAGAGAGAGA 
GATTGTGTTA AGATCTGTTA CTGTAAGAAC CAGATCTGGG TTTCATTTTT 
ATCTGTTTCT TCTTATAAAA GATCCAACAA CCCTTTGTTA CATATATATA 
ACATTCTGAA GCTGGTGATG ATTTCTGAAT GATTCAAATC CATTATCTTT 
AGATTTCTAC TTATTCATAG AGTGTCCCCT GATGTAAGTA GGAAGCTGCA 
TTTACATAGT ATGTAACAGA ACCACACAGG GCACAAGTAT TTGTTTGTGT 
TTTGTCTCTT GGCTTGATCT TGATCAATTC AGGGTTTCTT CTATTCAACA 
AGTAAAGCTT AGTGGTTCTC TGAGATGGAA GCAATAAAAA GATGAAAGGA 
AGAAAGACGG TGAAGCTCCT TTGCTATCTA ATTGGGTGAT TCGAAGAGGA 
AGTTAGAATA CTCATTGTCA TTGTTAAGCC TCAAGTTTTC ATTCATCAGC 
GAGGAGACAA GAAAGGCTTT CCCTTTTGTG TACCCAATGA ATATTTTGGA 
TGGTGAAGAA CATAGAGATT AAGGGCATGG TCAATGGGCG GTGAGTGGTT 
TTGTTGTGAT CGATAAAGCT CAATGAGCAC AGGCCAAATC TTTAGGTTAA 
AGTTTGGTGG CTGAGATGAT TGTTTTGATC TTTAAGAGCT GTGGGTTGAG 
GTGGCAGAAT TCGTTGTGTG TTTGACCTTT TTGATTTGAA TTTGCTGGTA 
GAGAGTTTTC CCAATTTTGG TATCTACTTT GCTTCTATGC CACGGATTCA 
GACAGTGAAT CTTTGTGTCT GAAGCAAAAA CCGAGTATTT TTTTACCGTT 
TTGGGGTAGG CTTCTTCTTA ACTTAAAGTG GAAGTCAAAA GCAATGTCTT 
GTTATTTTCA CTGTAACGAT TTAAGACAAC TGATCTCAAG TCGCTTTTCC 
TGTTTCGGTT CGTACTCTTA ATAATCTTCT ATTATTCTGG AGTTGAGATT 
G

Gene models with high sequence identity

  1. AT3G20310.1 [+] show detail - ethylene response factor 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 5.3e-23
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 22.985
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.4e-09
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.4e-09
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.2e-37
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.7e-15
superfamily DNA-binding, integrase-type 4.3e-23

See the detailed result >

AT3G20310.1

Model type
Protein coding
Short Description
ethylene response factor 7
Curator Summary
Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box
Computational Description
ethylene response factor 7 (ERF7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 3 (TAIR:AT1G50640.1); Has 5826 Blast hits to 5594 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5816; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-M23 introduced

  • F13209 - seed::increased size / seed::increased length / seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds