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  3. RAFL05-04-N01

RAFL05-04-N01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00886)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-N01 - full reading 
CTCCATCCGC TTCCTCACGA AAAACCCTAG CACAGCTCCG AGATCCCTTT 
TGTCGCCATG GGAGACTCCG GCGATCCTTT CTTGCGTAAT CCAAACGCCG 
CTGTTCAAGC TCGCGCTAAA GTTCAGAACA GAGCCAATGT TCTTCAGCTT 
AAGCTGATGG GTCAGAGCCA CCCTACTGGC TTAACAAACA ATCTCTTGAA 
GCTTTTTGAG CCACGTCCGC CATTGGAGTA CAAACCACCA CCAGAGAAGA 
GAAAGTGCCC GCCTTATACA GGTATGGCTC AGTTTGTAAG TAACTTTGCT 
GAGCCTGGGG ATCCAGAATA CGCTCCACCT AAGCCAGAAG TTGAATTACC 
TTCGCAGAAA AGGGAAAGAA TTCATAAATT GCGACTGGAG AAAGGTGTTG 
AAAAGGCTGC TGAGGACTTA AAGAAATATG ACCCCAATAA TGATCCAAAT 
GCTACTGGAG ATCCATACAA GACATTGTTC GTTTCAAGAC TTAACTACGA 
ATCCTCAGAG AGTAAGATTA AAAGGGAGTT TGAATCTTAT GGACCAATTA 
AACGGGTTCA TTTGGTGACT GATCAGCTGA CCAATAAACC CAAAGGATAT 
GCTTTCATTG AGTACATGCA CACCCGTGAC ATGAAAGCTG CATATAAGCA 
AGCTGATGGA CAAAAGATTG ACGGCAGAAG AGTTTTGGTT GATGTGGAGA 
GAGGTAGAAC CGTCCCAAAC TGGCGTCCAC GCAGGCTTGG TGGTGGACTT 
GGGACCTCAA GAGTGGGTGG TGGTGAAGAA ATTGTTGGGG AACAACAACC 
GCAAGGAAGA ACCTCCCAGT CAGAGGAGCC ATCGAGACCA CGGGAAGAGC 
GTGAGAAATC TCGGGAAAAG GGAAAAGAAA GGGAAAGGTC TCGTGAGCTG 
TCTCACGAAC AACCTCGAGA GAGGTCTCGT GACAGACCGA GAGAGGATAA 
GCACCACAGA GACCGAGACC AAGGAGGCAG AGACAGGGAT AGGGACAGCA 
GACGTGATCG TGACCGGACC CGTGACAGAG GAGACAGAGA CCGCCGTGAC 
CGTGACAGGG GACGGGATCG TACTTCAAGG GATCATGACC GAGACCGCAG 
TAGAAAGAAG GAGCGGGATT ATGAAGGAGG TGAATATGAG CATGAGGGTG 
GTGGTCGGTC CCGTGAGAGA GATGCAGAGT ACCGTGGCGA GCCAGAAGAA 
ACTCGTGGCT ACTATGAAGA CGATCAAGGG GACACAGACC GGTACAGTCA 
TCGCTACGAT AAAATGGAGG AAGATGACTT CAGATATGAA CGTGAGTACA 
AGCGGTCTAA GAGATCAGAA TCGCGAGAGT ATGTTCGTTG ATGTTTCATT 
CGGCTGTTTA AAACTCTAAA AACTTAAGAA TCCTTTTTGT TTATTCTAAA 
TCAAAACTTG ATGCAATTCT GTTTGTTACC TCTGAACTTG ATTGCTATTT 
TTTCTCTTTT GAAGTTTGTC ATATTATTAA TCT

Gene models with high sequence identity

  1. AT3G50670.1 [+] show detail - U1 small nuclear ribonucleoprotein-70K
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 2.6e-143
ProfileScan RNA recognition motif, RNP-1 17.319
superfamily RNA-binding domain, RBD 1.7e-23
HMMSmart RNA recognition motif, RNP-1 1.7e-21
Gene3D Nucleotide-binding, alpha-beta plait 1.2e-26
HMMPfam U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal 7.1e-22
HMMPfam RNA recognition motif, RNP-1 9.3e-18

See the detailed result >

AT3G50670.1

Model type
Protein coding
Short Description
U1 small nuclear ribonucleoprotein-70K
Curator Summary
Encodes U1 snRNP 70K
Computational Description
U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 287 Blast hits to 284 proteins in 72 species: Archae - 6; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-N01 introduced

  • F14104 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / whole plant::decreased height / stem::present in fewer numbers in organism / stem::abnormal / stem internode::decreased length
  • F15326 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found