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RAFL05-04-N20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02450)

full reading [+] show sequence

Nucleotide sequence: RAFL05-04-N20 - full reading 
ATTCATCGTC CTCTCTCGCT TGACCTACAA CACCCGATTC TCTAATCGAA 
ACCGTTTCTC TCTTTTTGAT CAGATCTCAG ATCTTTCCCT CTTTGATTCT 
TCTTCCTTAG ATCGATTCTC TCTAGAAACA ACAATGGCGT CTGGGCGTGA 
AGAGTTCGTA TACATGGCTA AGCTCGCGGA GCAAGCGGAG AGGTACGAAG 
AGATGGTAGA GTTTATGGAG AAAGTCTCCG CCGCCGTTGA TGGCGATGAA 
CTCACCGTAG AAGAGCGAAA TCTTCTCTCC GTCGCTTATA AGAATGTGAT 
TGGTGCTCGC CGTGCCTCGT GGCGTATCAT TTCATCGATC GAGCAGAAGG 
AAGAGAGCCG TGGTAACGAT GACCACGTCA CGGCGATCCG TGAATATAGG 
TCTAAGATCG AGACGGAACT CTCCGGAATC TGCGACGGAA TCCTTAAGTT 
GCTTGACTCT AGACTCATCC CTGCCGCTGC TTCTGGTGAT TCCAAGGTCT 
TTTACCTTAA GATGAAGGGA GATTATCACA GGTACTTGGC TGAGTTTAAG 
ACTGGTCAAG AGAGGAAAGA CGCCGCCGAA CATACACTCG CCGCTTACAA 
ATCTGCTCAG GATATTGCTA ATGCAGAGCT TGCTCCAACA CACCCAATTC 
GTCTTGGTCT TGCATTGAAC TTCTCTGTGT TCTATTACGA GATCCTCAAT 
TCTCCTGATC GTGCCTGTAA CCTCGCCAAA CAGGCCTTTG ATGAGGCGAT 
TGCAGAGTTG GACACTCTTG GTGAAGAGTC ATACAAAGAC AGTACCTTGA 
TCATGCAGCT TCTTCGTGAC AATCTCACTC TCTGGACATC TGATATGCAG 
GATGATGCTG CGGATGAGAT CAAGGAAGCA GCAGCGCCAA AACCGACCGA 
GGAACAGCAG TGATCTTTTG AGTGAAACTG CTAGTTTTCT TCTAGGGTTT 
GGAATTTCTT CTCTTTCTCG TCCATATGTT TTTCTTAATC CATCTAAGAG 
GTCGCTCTTG CCATTTCGCT CATCTTCAAA AGCTTATTCA TTCATCATAT 
TTGTGGCAAG TCTGAACCAT CAATCATCTT TTTATCTCTT TTTAATTTAT 
TTTCTCTTTT CTTATTTCTT TGTTGTTATC GATTTCAATG TCTGTGTAAT 
CGAAACTTGC TTTCTTTTCT CATCAATTTG AAGATCATAA AGTCTCTTGT 
CTCTT

Gene models with high sequence identity

  1. AT1G78300.1 [+] show detail - general regulatory factor 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam 14-3-3 protein 2.2e-115
HMMPanther 14-3-3 protein 9.2e-211
Coil coiled-coil 0
HMMSmart 14-3-3 protein 4.1e-204
superfamily 14-3-3 protein 1.3e-107
PatternScan 14-3-3 protein 0
PatternScan 14-3-3 protein 0
Gene3D 14-3-3 protein 1.5e-107
FPrintScan 14-3-3 protein 2.6e-88
FPrintScan 14-3-3 protein 2.6e-88
FPrintScan 14-3-3 protein 2.6e-88
FPrintScan 14-3-3 protein 2.6e-88
FPrintScan 14-3-3 protein 2.6e-88
FPrintScan 14-3-3 protein 2.6e-88
HMMPIR 14-3-3 protein 1.1e-179

See the detailed result >

AT1G78300.1

Model type
Protein coding
Short Description
general regulatory factor 2
Curator Summary
G-box binding factor GF14 omega encoding a 14-3-3 protein
Computational Description
general regulatory factor 2 (GRF2); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GF14 protein phi chain (TAIR:AT1G35160.1); Has 2698 Blast hits to 2688 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1259; Fungi - 318; Plants - 766; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-04-N20 introduced

  • F01636 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found