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  3. RAFL05-05-A20

RAFL05-05-A20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00777)

full reading [+] show sequence

Nucleotide sequence: RAFL05-05-A20 - full reading 
AATCTCCCTC TTTACTTTTT TTCTTTCATC ATATAAAGGG TTGGTGAAAT 
ATGAATGGAA TCCAATTTCG TTGGGAGGTT GTTGTATATT ATAAGTTTTT 
AGTGTCTAAT CTTTTTGAAC TATTTGTTGA AATTAAGGTG TAAAGTTGTT 
CCATTCATCA AAAAGCTATG GATTTCAATA GAAAAGCTCA TCCAGATTGC 
GTATATGCGG ATAATCCTTT CCATGAATGT GCTTCAGCTT GTTTAGAGAA 
AATTGCTCAA GGCCATGTCA AGAAGAACAC TAAGAAGCAA AGTTCAAGGC 
TTCTTAGCTT CTCAGGGAGT TTCGGTAGGA AAAAGAAGGA GTCGAATTCA 
CAACCGCCTA CACCGCTATC CGCAAGGCCT TATCAAAACG GCAGAGGCGG 
TTTTGCAAAT GGTAATTCCC CAAAGGTTCA TCATTCTGTA GCTCCACCTG 
CTTCCGTGAA GAAGAAGATT GTTTCTGAAA CGAAAAATTC TTTCACTTCT 
TCATCATCCG GTGATCCGGA TGATTTCTTC AACCATAAAC CAGAGAAGAA 
ACCTTCTCAA ACCATTCCCC TTTCATCAAA CAATTTGGTT GATCAAAGCA 
AAGTGGTATC ACCTAAACCG GGAATACAAG AACACAATGG GAAGATTGGA 
GAAGGCGGCG AAACTAGACT CTTTAGTTTC CTAAGCCTTC CAAGATCGCC 
TGGAAAAGAG AGCAATGATG ATTTTTCTGA TGATGATGAC GAAAACAACA 
ATGAGATTGG TGTAGAGCTC GATCTCGAAT CAGTAATGTC TGACACTTTT 
GTCTCTGTCG GGAAATACCG AGTCAGATCG GGTTCATCCA CTATACTAAG 
TGCTGTCATC GAAAAGCACG GAGACATTGC TCAAAACTGT AAGCTGGAAT 
CGGATTCAAT GCGATCACGT TACCTCGAGT GTTTATGCTC ACTGATGCAG 
GAACTTAGGT CAACCCCGGT AGGGCAGTTG AGCAAAGTCA AGGTCAAAGA 
GATGCTTGCG GTTCTCAAAG ACTTGGAGTC TGTGAACATT GAAGTAGCTT 
GGCTACGTTC TGTTCTTGAA GAGTTTGCGC AGTCTCAAGA AGATGTAGAA 
AATGAGAAAG AGAGGCATGA TGGTTTAGTG AAGGCTAAGA GAGAAGAGCT 
TGAGGCTCAA GAAACGGATT TGGTTAGGAT GGAGAAGGAA GTGGTGGAAG 
TGAAGCGGCG GATTGAGGAG ACGCGGGCTC AGATGGTTGA GATCGAAGCA 
GAACGGTTGA GGATGGAGAA AATGGGATTC AAAATGGAGA AATTTAAAGG 
GAAATCGTTT ATAGATGAGC TTCTGTGAGT TTGAGTTGTG TGTGATGTTG 
TTAGTAGTAA GCCAAGGGTA GTAGGTAATA GCACAAAATC AAAAATGCTC 
TAATAAATGA GTTTTTAAGG TT

Gene models with high sequence identity

  1. AT4G35110.1 [+] show detail - Arabidopsis phospholipase-like protein (PEARLI 4) family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Phospholipase-like, arabidopsis 1.6e-82
Coil coiled-coil 0
Coil coiled-coil 0
HMMPanther PEARLI 4-RELATED 4.7e-288
HMMPanther NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED 4.7e-288

See the detailed result >

AT4G35110.1

Model type
Protein coding
Short Description
Arabidopsis phospholipase-like protein (PEARLI 4) family
Computational Description
Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 682 Blast hits to 587 proteins in 127 species: Archae - 27; Bacteria - 57; Metazoa - 143; Fungi - 39; Plants - 275; Viruses - 32; Other Eukaryotes - 109 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-05-A20 introduced

  • F22150 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found