1. Home
  2. Full-length cDNAs
  3. RAFL05-05-C12

RAFL05-05-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00754)

full reading [+] show sequence

Nucleotide sequence: RAFL05-05-C12 - full reading 
CCCCCCCCCC CCCGGCAGAA CCCTTAAACC TTATCTCTTC ACCACCAGCT 
TCTCAAAGCT TTAGCCTCGA GAGCAAAATT CTCTCAAGCT TTAGCCATGT 
CTGCCTCTGC TTCTTCCCTC TCTGCTTTCA ATCCTAAATC CCTTCCTCTC 
TGCGTCTCCA GACCCGCTTC CGTCTCCGTC TTACCTCCTT CCCTCTCCTT 
CAAACTTCAC TCCGACCACC TCGTCTCTAT CTTCGCTTCC TCCGCCCTCA 
AATGCTCATC CCCCGCCGAG TACCCGTCGC GTTTCGTTAG AAACGTTGCT 
GTATCTTCGG ATTTTGAGGT GGAGGAAGAT GATATGTTCG CTGACGGTGA 
CGATTCAGCG CCTGTGGAGC GTAACTCCTT CTCTCCTGAC CTTAAGCTCT 
TTGTTGGTAA CCTTTCTTTT AACGTTGATA GCGCTCAGCT TGCTCAGCTC 
TTTGAGAGCG CTGGAAATGT TGAGATGGTT GAGGTTATCT ATGACAAAGT 
GACTGGCCGG AGCAGGGGTT TCGGATTTGT GACAATGTCA ACCGCAGCGG 
AAGTTGAAGC AGCAGCTCAA CAGTTCAATG GCTATGAATT TGAAGGCAGA 
CCTTTGAGAG TCAATGCTGG CCCTCCTCCA CCTAAAAGAG AGGAATCCTT 
CTCCAGAGGA CCAAGAAGTG GAGGTTACGG TTCTGAGCGT GGTGGAGGTT 
ACGGTTCCGA GCGTGGTGGT GGTTATGGTT CCGAGCGTGG TGGTGGTTAT 
GGTTCCGAGC GTGGTGGTGG ATACGGTTCT CAACGTAGTG GTGGTGGTTA 
CGGAGGGTCT CAACGTTCCA GTTATGGTTC GGGGTCAGGG TCCGGTTCGG 
GCTCAGGTTC AGGAAACCGT CTCTACGTGG GCAACCTTTC TTGGGGTGTT 
GATGACATGG CACTTGAGAA CTTGTTTAAC GAGCAAGGAA AGGTAGTTGA 
AGCTAGGGTT ATCTACGACA GGGACAGCGG TAGATCCAAG GGTTTTGGAT 
TTGTGACACT TAGCTCTTCC CAAGAGGTTC AGAAGGCGAT CAATTCCTTG 
AATGGAGCAG ATTTGGATGG AAGACAAATA AGAGTCTCAG AGGCTGAGGC 
TAGGCCACCA AGAGGCCAAT TTTGAGCGGT CACACCTCTT TCATATTCTC 
AAAAAATGCA AATTCTGGAG GGTTCTTTGA AGCATATAGG GTTAGTGGAA 
AATGGCGGTT TCAGACAGTA ACTAAAACTC ACTGCTGGTG CACGCTAGGC 
TTTATCCGCC TTTGATGCAT GAAGGTCGTT AAGGAATGGT CTTTTTTTGA 
GAAAGATAAC AATTAGATTA AAGCAGAGAA CCCATGTTTC TTGTCTGTTC 
GAATCCTGCG AGATTGGTTG TAGTTGAAGT TGCATTTTCT TCTTGTCTTT 
TTTGTTGGTA TTTTGACACA ATTTGGCTTT TTGGCATATG AGAGTGACTG 
TAGCAGTCTG TTTTATTTGA TGTTCGTGAT CTTCTTATGT TCTGAAAACC 
AGTTTTCCTA AAACTTAACA AATTTCGATA TGGAACAAGA AATTTTTTG

Gene models with high sequence identity

  1. AT3G53460.1 [+] show detail - chloroplast RNA-binding protein 29
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan RNA recognition motif, RNP-1 18.462
ProfileScan RNA recognition motif, RNP-1 20.338
HMMPfam RNA recognition motif, RNP-1 1.6e-19
HMMPfam RNA recognition motif, RNP-1 3.1e-20
Gene3D Nucleotide-binding, alpha-beta plait 3.4e-30
Gene3D Nucleotide-binding, alpha-beta plait 1.4e-27
HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 1.3e-78
HMMPanther RNA-BINDING PROTEIN 1.3e-78
HMMSmart RNA recognition motif, RNP-1 1.4e-27
HMMSmart RNA recognition motif, RNP-1 7.4e-28
superfamily RNA-binding domain, RBD 2.7e-30
superfamily RNA-binding domain, RBD 4.3e-27

See the detailed result >

AT3G53460.1

Model type
Protein coding
Short Description
chloroplast RNA-binding protein 29
Curator Summary
Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.
Computational Description
chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 992946 Blast hits to 485878 proteins in 21699 species: Archae - 20986; Bacteria - 587269; Metazoa - 197754; Fungi - 28530; Plants - 64033; Viruses - 69323; Other Eukaryotes - 25051 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-05-C12 introduced

  • F28436 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::abnormal / cauline leaf::abnormal / sporophyte vegetative stage::decreased speed / fruit::abnormal / stem::abnormal
  • F28521 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found