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RAFL05-05-K10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01061)

full reading [+] show sequence

Nucleotide sequence: RAFL05-05-K10 - full reading 
AACAACACAG AACTAGAAAA GAGAAACACT ATTAGATCAT CACTTCTCAG 
ATTTCGATAT TCCCAATAAA TAATAAATAC TCTCAGTTCT TCTCTTCTCC 
AAGAACAAAA AAAAAAAATG AATTCAGAAT CGCTAGAAAA TCTTCACCGT 
CCATTAATCG AATCATCGAA GTCGTTCGTC GATTATCGTC TCGAGACTGT 
GTTAACAGAT CGAGAGTTAC CGTATTTTCG CCGGATTTAT CTAGCGATGA 
TGATTGAGAT GAAGTTTCTC TTTCATCTGG CGGCTCCGGC GATCTTTGTT 
TACGTCATCA ACAACGGCAT GTCAATTCTT ACACGTATCT TCGCTGGACA 
CGTAGGAAGC TTCGAACTCG CCGCCGCTTC ACTTGGAAAC AGTGGTTTCA 
ACATGTTCAC CTATGGACTT CTGCTTGGAA TGGGAAGTGC AGTGGAAACA 
TTATGTGGTC AAGCACATGG AGCTCATAGA TACGAAATGC TTGGAGTTTA 
CCTCCAAAGA TCAACAGTTG TTCTAATCCT AACATGTCTA CCAATGTCAT 
TTCTCTTCCT CTTCTCAAAT CCGATCCTCA CAGCACTTGG AGAGCCAGAG 
CAAGTGGCAA CATTGGCTTC AGTATTCGTC TACGGTATGA TCCCGGTGAT 
CTTCGCTTAC GCAGTCAATT TCCCTATCCA GAAGTTTCTC CAATCACAAA 
GCATCGTCAC TCCAAGTGCC TACATATCAG CTGCAACGCT TGTGATCCAT 
CTCATACTTT CGTGGATCGC TGTGTATCGT CTTGGTTACG GTCTTTTGGC 
TTTGTCTTTG ATACATAGCT TCTCGTGGTG GATCATTGTT GTGGCTCAGA 
TTGTTTATAT TAAAATGAGT CCGAGATGTC GTCGGACTTG GGAAGGTTTT 
AGTTGGAAAG CTTTTGAAGG TCTTTGGGAT TTTTTCCGAT TATCAGCTGC 
TTCTGCCGTC ATGCTTTGTC TTGAATCTTG GTACTCTCAG ATTCTTGTTT 
GACTCGCCGG ACTTCTCAAG AACCCTGAGC TTGCTTTGGA TTCTCTTGCT 
ATCTGCATGT CAATTTCTGC AATCTCATTC ATGGTCTCCG TTGGATTCAA 
CGCAGCTGCA AGTGTGAGAG TAAGCAACGA GCTAGGAGCC GGAAACCCGA 
GAGCAGCCGC GTTCTCCACA GTCGTGACAA CGGGAGTATC ATTCTTACTA 
TCGGTTTTCG AAGCCATCGT GGTCTTATCG TGGCGTCACG TCATCAGCTA 
TGCGTTTACT GATAGTCCAG CAGTGGCTGA GGCCGTTGCG GATTTATCTC 
CCTTTTTAGC CATCACAATT GTCCTCAATG GAATTCAGCC TGTTTTGTCC 
GGTGTGGCTG TTGGATGTGG ATGGCAAGCA TTTGTTGCGT ACGTAAACAT 
TGGATGTTAC TACGTTGTGG GGATTCCAGT GGGATTCGTT CTTGGCTTCA 
CTTATGATAT GGGAGCTAAG GGAATATGGA CTGGGATGAT TGGTGGTACT 
TTAATGCAAA CAATAATCTT AGTGATTGTC ACTTTACGAA CTGATTGGGA 
CAAAGAGGTT GAGAAAGCTT CGAGCAGATT GGACCAGTGG GAAGAGAGCC 
GTGAGCCGCT TTTGAAGCAA TAAATAAATT AATGAAATGA TTTGTTTATT 
TTTATTTTTT TTGGGAGTTT TGAGGTCAGA TTGAAATCAA AATTTTTGTT 
TCCCCGAAAT ATGGCGATAG ATGATCACTT GTAAGATGCA TATTCAATTG 
TTAAACTCTC GTTTTTCAAT CGAAAAATGT ATATCGCTTT GTTATTTAAT 
GACTTGGAAA TTTGAGTTTT TTTTTTGGTT TCTTGGTGTT GTGGGAGTTT 
TTTTTTTGAT GGACATTTGA GATTAGAATA TATAGGAGCA AAGTTGAAAG 
TTTATTTCAG TGTATGATTG TATATGAAAA TAAAGAGTGA GTTGTTTCTT 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G61890.1 [+] show detail - MATE efflux family protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMPfam Multi antimicrobial extrusion protein MatE 1.2e-34
HMMPfam Multi antimicrobial extrusion protein MatE 8.8e-39
Coil coiled-coil 0
HMMPanther MULTIDRUG RESISTANCE PUMP 1.5e-140
HMMPanther Multi antimicrobial extrusion protein MatE 1.5e-140
HMMPanther MULTIDRUG RESISTANCE PUMP 3.7e-135
HMMPanther Multi antimicrobial extrusion protein MatE 3.7e-135

See the detailed result >

AT1G61890.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 9516 Blast hits to 9487 proteins in 1915 species: Archae - 228; Bacteria - 6498; Metazoa - 145; Fungi - 328; Plants - 1371; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-05-K10 introduced

  • F09128 - Specific phenotypes were NOT observed.
  • F23007 - Specific phenotypes were NOT observed.
  • F25521 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found