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Full-length cDNAs
RAFL05-05-L13

RAFL05-05-L13

RIKEN Arabidopsis Full-length cDNAs

CTGGGAGGAG AGAGGCCGCC GGAGGAGAGA GAAAAAGAGT TGGGGGATTG 
CTTTTTGATT TCTCCTTCTC CATCTTCGAC CTCGAGAGAA GCTAAAAATG 
GCAGAAGAAG CGGATACGAA CATCGAGATC TGGAAGATTA AGAAACTAAT 
CAAGGGACTT GAATCAGCTA GAGGTAATGG AACGAGTATG ATCTCTCTTA 
TTATGCCTCC TCGTGATCAA GTATCTCGTG TCACAAAGAT GCTTGGTGAT 
GAATATGGAA CTGCTTCAAA CATTAAGAGT CGAGTCAATC GTCAATCTGT 
TTTGTCTGCC ATTACTTCTG CTCAACAAAG GTTGAAGCTT TACAACAAGG 
TTCCTACTAA TGGTCTTGTT CTCTATACCG GCACCATTGT TAATGATGAC 
GGTAAAGAGA AGAAGGTGAC GTTTGATTTC GAGCCCTTTA GGCCGATTAA 
TGCTTCCTTG TACCTTTGTG ACAACAAGTT CCATACTGAG GCATTGAACG 
AGCTTCTTGA GTCTGATGAC AAGTTTGGTT TCATTGTTAT GGATGGTAAT 
GGGACACTGT TTGGAACTTT GAGTGGGAAT ACTAGAGAGG TTCTTCATAA 
GTTTACTGTT GATCTCCCGA AGAAGCACGG AAGAGGAGGA CAGTCTGCAC 
TTCGTTTTGC CCGTCTTAGG ATGGAGAAGA GACACAATTA TGTTAGGAAA 
ACCGCTGAGC TTGCTACACA GTTTTACATC AATCCAGCTA CGAGTCAGCC 
TAATGTCTCT GGTCTGATCC TTGCTGGTTC AGCTGATTTC AAAACTGAGC 
TCAGTCAATC AGAGTTGTTT GATCCTCGTC TTCAAGCTAA GATATTGAAT 
GTTGTTGATG TTTCTTACGG AGGTGAAAAC GGTTTCAACC AAGCGATTGA 
GCTGTCTGCT GAGATTCTAT CCAATGTGAA GTTCATACAG GAGAAGAAAC 
TGATTGGGAA GTACTTTGAG GAGATAAGTC AAGATACCGG GAAATACGTT 
TTCGGTGTGG AGGATACTCT AAAGGCTCTA GAAATGGGTG CTATCGAAAC 
CCTTATCGTG TGGGAGAATC TGGACATAAA CAGGTATGAG CTAAAGAACA 
GTACGACAGG AGAAATGGTG GTGAAACACT TTGGGAAAGA TCAAGAGTCT 
GATACAAGCA ACTTCCATGA TTCAGAGACT AACGCGGAGC TAGAAGTACA 
GGAGAAGATG CCTCTACTCG AATGGTTTGC AAATGAGTAC AAACGTTTCG 
GCTGCACTCT TGAGTTTGTG ACTAACAAAT CCCAAGAAGG GTCACAGTTT 
TGCAGAGGTT TTGGTGGGAT TGGTGGTATG TTACGTTACC AGCTTGACAT 
GAGGACATTT GATGAGTTAT CAGATACTGA AGTTTACGAA GATTCTGATT 
AAAGTGGGAA AACTTTTGGT GATGGTTTCA GATCGATACA GTGAGGGAAA 
ATGTGGCATA AAGATGGTCT TTTATCAACA AAGAAGAGAG ATTTAAGTTT 
CTTGTTTTCT ATAGAACATT AAAAAGCTTG ACTCTTTCTT TCTGTTAGAC 
AATTTGTGTT GTAATTTTTG AGGATTTTAA ACATCTTTTT GTTGTTAAAA 
AAAAAAAAAA AAAAAAACAA AAAAAAAAAA AAAA

Gene models with high sequence identity

AT1G12920.1 [+] show detail - eukaryotic release factor 1-2
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	N-terminal domain of eukaryotic peptide chain	3.6e-56
superfamily	L30e-like	2e-50
superfamily	Translational machinery components	5e-48
HMMPfam	eRF1 domain 2	5.5e-42
HMMPfam	eRF1 domain 3	4.9e-38
HMMPfam	eRF1 domain 1	4.2e-28
Gene3D	no description	1.5e-42
Gene3D	no description	4.4e-39
Gene3D	no description	2.2e-59
HMMPanther	EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUN	0
HMMPanther	Peptide chain release factor eRF1/aRF1	0
HMMTigr	eRF: peptide chain release factor eRF/aRF,	1.9e-211
HMMTigr	Peptide chain release factor eRF1/aRF1	4.3e-154

See the detailed result >

AT1G12920.1

Model type: Protein coding
Short Description: eukaryotic release factor 1-2
Curator Summary: Encodes a eukaryotic release factor one homolog.
Computational Description: eukaryotic release factor 1-2 (ERF1-2); FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination; LOCATED IN: translation release factor complex, plasma membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Peptide chain release factor eRF1/aRF1 (InterPro:IPR004403); BEST Arabidopsis thaliana protein match is: eukaryotic release factor 1-3 (TAIR:AT3G26618.1); Has 1141 Blast hits to 1136 proteins in 380 species: Archae - 310; Bacteria - 0; Metazoa - 243; Fungi - 154; Plants - 143; Viruses - 3; Other Eukaryotes - 288 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-05-L13 introduced

F20740 - rosette leaf::abnormal / rosette leaf::abnormal / stem::present in fewer numbers in organism / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::abnormal / fruit::increased length / fruit::decreased thickness
F21611 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found