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RAFL05-05-M05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01028)

full reading [+] show sequence

Nucleotide sequence: RAFL05-05-M05 - full reading 
ATCGGTGAGG TTGAGAGTAA TTCACTACAC ACACACAAAA AATAAATTGA 
GTGCCTCCCC CAAAAACAAA ATTGGTAGAT AACGAGCAAT TGTTTTTTTT 
CAGATTTGAT CCTGAATTTT TACATTTTTT TTTTTGCAAT CTCCCCCTAA 
TCTGTTGTTT CTCGCTTCTT CTTCTGTTAA TCATCTGTCT TTCAAAAAGA 
AAGAAAAAAG AAAAATTCGA TTTCTGGGTT TGTTTTTGTC ATACAGAAAA 
AAATCAAGCT TATGAATTTG TGTTTAATTT TTTGTTTTAA TTTGAAAGGC 
AGGTTTTTTC AGAACGAGAT CGTTTTTTCA AATTTCTTCT GATTTTACCT 
CTTTTTTTCT TCTTAGATTT TAGTGAATCG AGGGTGAAAT TTTTGATTCC 
CTCTTTTCGG ATCTACACAG AGGTTGCTTA TTTCAAACCT TTTAGATCCA 
TTTTTTTTTA ATTTTCTCGG AAAAATCCCT GTTTCTTTAC TTTTTTATAA 
GTCTCAGGTT CAATTTTTTC GGATTCAAAT TTTTATTTTA AATGGCAGCT 
GCTATGAATT TGTACACTTG TAGCAGATCG TTTCAAGACT CTGGTGGTGA 
ACTCATGGAC GCGCTTGTAC CTTTTATCAA AAGCGTTTCC GATTCTCCTT 
CTTCTTCTTC TGCAGCGTCT GCGTCTGCGT TTCTTCACCC CTCTGCGTTT 
TCTCTCCCTC CTCTCCCCGG TTATTACCCG GATTCAACGT TCTTGACCCA 
ACCGTTTTCA TACGGGTCGG ATCTTCAACA AACCGGGTCA TTAATCGGAC 
TCAACAACCT CTCTTCTTCT CAGATCCACC AGATCCAGTC TCAGATCCAT 
CATCCTCTTC CTCCGACGCA TCACAACAAC AACAACTCTT TCTCGAATCT 
TCTCAGACCA AAGCCGTTAC TGATGAAGCA ATCTGGAGTC GCTGGATCTT 
GTTTCGCTTA CGGTTCAGGT GTTCCTTCGA AGCCGACGAA GCTTTACAGA 
GGTGTGAGGC AACGTCACTG GGGAAAATGG GTGGCTGAGA TCCGTTTGCC 
GAGAAATCGG ACTCGTCTCT GGCTTGGGAC TTTTGACACG GCGGAGGAAG 
CTGCGTTGGC CTATGATAAG GCGGCGTACA AGCTGCGCGG CGATTTCGCC 
CGGCTTAACT TCCCTAACCT ACGTCATAAC GGATCTCACA TCGGAGGCGA 
TTTCGGTGAA TATAAACCTC TTCACTCCTC AGTCGACGCT AAGCTTGAAG 
CTATTTGTAA AAGCATGGCG GAGACTCAGA AACAGGACAA ATCGACGAAA 
TCATCGAAGA AACGTGAGAA GAAGGTTTCG TCGCCAGATC TATCGGAGAA 
AGTGAAGGCG GAGGAGAATT CGGTTTCGAT CGGTGGATCT CCACCGGTGA 
CGGAGTTTGA AGAGTCCACC GCTGGATCTT CGCCGTTGTC GGACTTGACG 
TTCGCTGACC CGGAGGAGCC GCCGCAGTGG AACGAGACGT TCTCGTTGGA 
GAAGTATCCG TCGTACGAGA TCGATTGGGA TTCGATTCTA GCTTAGGGGC 
AAAATAGGAA ATTCAGCCGC TTGCAATGGA GTTTTTGTGA AATTGCATGA 
CTGGCCCAAG AGTAATTAAT TAAATATGGA TTAGTGTTAA ATTTCGTATG 
TTAATATTTG TATTATGGTT TGTATTAGTC TCTCTGTGTC GGTCCAGCTT 
GCGGTTTTTT GTCAGGCTAG ACCATGCCAC AGTTTTCATT TTATGTAATC 
TTTTTTTCTT TTGTCTTATG TAATTTGTAG CTTCAGTTTC TTCATCTATA 
ATGCAATTTT ATTATGATTA AGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT1G78080.1 [+] show detail - related to AP2 4
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
superfamily DNA-binding, integrase-type 8.2e-25
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 9.3e-18
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1e-37
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.1e-23
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.169
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.1e-11
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.1e-11

See the detailed result >

AT1G78080.1

Model type
Protein coding
Short Description
related to AP2 4
Curator Summary
Encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. Role in mediating light and ethylene signaling.
Computational Description
related to AP2 4 (RAP2.4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G22190.1); Has 5853 Blast hits to 5721 proteins in 258 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 5806; Viruses - 11; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-05-M05 introduced

  • F16621 - stem::increased thickness / cauline leaf::epinastic / root::present in greater numbers in organism
  • F19802 - Specific phenotypes were NOT observed.
  • F26001 - Specific phenotypes were NOT observed.
  • F29915 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found