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RAFL05-05-M24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01066)

full reading [+] show sequence

Nucleotide sequence: RAFL05-05-M24 - full reading 
AGGGTTTTCT CAGCCGCTTA AGAGCTTATC ATCTTTGTGC TTCCTGCAAA 
TAGCTCTTTG CTGTTGATCT TTCTCCTCCA TCAACAAACA TGGGTAAGAC 
ACGTGGTATG GGAGCTGGGC GTAAGCTGAA GAGACTCCGA ATTAACCAGA 
GGTGGGCTGA CAAGCAGTAC AAGAAGTCTC ACTTGGGAAA TGAGTGGAAG 
AAGCCTTTTG CTGGTTCTTC TCACGCTAAA GGAATTGTTC TTGAGAAAAT 
TGGTATTGAG GCTAAGCAGC CTAACTCTGC TATCCGTAAG TGTGCTAGAG 
TTCAGCTTAT CAAGAATGGA AAGAAGATTG CTGCCTTTGT CCCCAATGAT 
GGTTGTTTGA ACTACATCGA GGAAAACGAT GAGGTCTTGA TTGCTGGATT 
TGGTCGTAAG GGTCACGCTG TGGGAGATAT TCCCGGAGTT AGGTTCAAGG 
TCGTGAAGGT TTCTGGTGTT TCACTCTTGG CCCTCTTCAA GGAAAAGAAG 
GAGAAGCCAA GATCTTAAGC AACCCGTACA AAAAGCTTCA AGCTTTTGAT 
ATGGTTTTTG ATAGTTCAGT TTAAGTCTTG TTCTGTTCTA CTTTATGTTT 
CAAGAACTTG ATTTTGTGTT ACATTTTATG AGTTTTTGAA TTAAGACATG 
ATCGTTTAAT GTTATTGGTG TTTAATCAAT TTACTCTTTT AACCTAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G02960.1 [+] show detail - Ribosomal protein S12/S23 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein S23, eukaryotic/archaeal 5e-59
superfamily Nucleic acid-binding, OB-fold-like 5.5e-33
PatternScan Ribosomal protein S12/S23 0
HMMPanther 40S RIBOSOMAL PROTEIN S23 3.1e-55
HMMPanther Ribosomal protein S12/S23 3.1e-55
HMMPIR Ribosomal protein S12/S23 1.7e-48
HMMPfam Ribosomal protein S12/S23 8.2e-41
Gene3D Nucleic acid-binding, OB-fold 7.7e-22

See the detailed result >

AT5G02960.1

Model type
Protein coding
Short Description
Ribosomal protein S12/S23 family protein
Computational Description
Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT3G09680.1); Has 9074 Blast hits to 9071 proteins in 3107 species: Archae - 259; Bacteria - 5125; Metazoa - 487; Fungi - 294; Plants - 977; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-05-M24 introduced

  • F06417 - seed::increased length / seed::decreased width
  • F12851 - Specific phenotypes were NOT observed.
  • F25516 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found