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RAFL05-05-O01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01174)

full reading [+] show sequence

Nucleotide sequence: RAFL05-05-O01 - full reading 
ATCAAATCCA TCTCCCACTC TTCTAGCATC TTGAAGCTTA AATCTCAGCC 
GTCCGATCAT GCCGATCAGA AACATCGCCA TTGGCCGTCC AGATGAAGCC 
ACCCGTCCCG ATGCCTTAAA GGCGGCGTTG GCTGAGTTCA TTTCAACTTT 
GATCTTTGTC GTCGCCGGTT CAGGCTCTGG CATGGCTTTC AACAAGCTCA 
CTGAAAACGG AGCCACCACT CCTTCTGGTC TCGTAGCTGC TGCAGTGGCT 
CATGCCTTTG GACTCTTCGT CGCTGTCTCA GTTGGTGCCA ACATCTCTGG 
TGGACACGTT AACCCTGCCG TCACTTTCGG TGCTTTCATT GGTGGTAACA 
TCACTCTCCT CCGTGGTATC CTCTACTGGA TTGCTCAGCT TCTCGGCTCC 
GTCGTCGCTT GCCTCATCCT TAAATTCGCC ACCGGTGGCT TGGCTGTGCC 
GGCTTTTGGT CTCTCTGCTG GAGTAGGAGT GTTGAACGCT TTCGTTTTCG 
AGATCGTGAT GACATTCGGG CTTGTTTACA CCGTCTACGC TACAGCCATT 
GACCCCAAAA ACGGGAGTCT TGGAACAATT GCTCCCATCG CAATCGGTTT 
CATTGTTGGA GCCAACATCT TAGCTGGAGG AGCTTTCTCT GGAGCCTCCA 
TGAATCCCGC CGTGGCTTTC GGACCAGCGG TGGTGAGCTG GACATGGACC 
AACCACTGGG TCTACTGGGC CGGACCTCTC GTCGGCGGTG GAATCGCTGG 
ACTCATCTAC GAAGTTTTCT TCATCAACAC CACACACGAG CAGCTCCCAA 
CCACAGACTA CTGAATTAAT CTCTCTTTTT CTCTCTTGTG TAATTTTATT 
CGACTTTGAA TTTGAATTTT AATGTCTTTT TAATTTCCGT TTGTGTAATT 
TCGAATCATC AAGGGGTTTA TGATCGTTCG ATCTTTTAGA TGAATCCTTG 
TCCGTTGGTT TCAAGAGTGG CCATTGCAAT TTCGACTATA TAATGTGAAT 
TATGTATCAA TCACAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT2G36830.1 [+] show detail - gamma tonoplast intrinsic protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Major intrinsic protein 3.3e-77
HMMTigr Aquaporin 4.9e-68
FPrintScan Major intrinsic protein 1.2e-50
FPrintScan Major intrinsic protein 1.2e-50
FPrintScan Major intrinsic protein 1.2e-50
FPrintScan Major intrinsic protein 1.2e-50
FPrintScan Major intrinsic protein 1.2e-50
FPrintScan Major intrinsic protein 1.2e-50
superfamily Major intrinsic protein 9e-64
HMMPanther TONOPLAST INTRINSIC PROTEIN 2.6e-131
HMMPanther Major intrinsic protein 2.6e-131
PatternScan Major intrinsic protein, conserved site 0
Gene3D Major intrinsic protein 4.9e-63

See the detailed result >

AT2G36830.1

Model type
Protein coding
Short Description
gamma tonoplast intrinsic protein
Curator Summary
Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems.
Computational Description
gamma tonoplast intrinsic protein (GAMMA-TIP); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2 (TAIR:AT3G26520.1); Has 11016 Blast hits to 10983 proteins in 2213 species: Archae - 82; Bacteria - 5238; Metazoa - 1501; Fungi - 451; Plants - 2489; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-05-O01 introduced

  • F00611 - Specific phenotypes were NOT observed.
  • F24213 - seed::decreased width

Mutant lines with disrupted or induced

5 mutant lines found