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  3. RAFL05-05-O12

RAFL05-05-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01110)

full reading [+] show sequence

Nucleotide sequence: RAFL05-05-O12 - full reading 
TGAGACTCTG GCATGTCATC AATGTTGTCC CCGCCGGTAA AGAAGAGGAA 
GATAGTGGCG CCGCAATCGC AGTCGGCATC GGCCTCGTTT CAGTCGCTTC 
CCGATGATTT GATATTGAGC ATCGTCGCTC GCGTCCCGAG ATTGTACCAT 
CGGACAGTCT CGCTCGTCTG CAAGAGCTTT CGATCTCTTC TAGTTTCACC 
GGAGCTTTAC AAGGCCCGAT CAGTCTCAGG CCACACCGAG AGCTGTCTCT 
ATCTGTCCAT AGCGTGTTAT CCTGATTATC GCATGTTCAC CCTCTGCCGG 
AAACCTGATC AAACCCTAAC CACCAGTGAG GAGGAGGAGA AGAAGAAATC 
AAATGGTTAT TATTTGGCTC CAGTCCCAGA TCCAGATTCT CATCCTGTCT 
ACTTCTCGAG TCTCGTCACG GTTGGTTCTG ATATCTACAA CATTGCCGGT 
TCGCACGCCT CCTCTAACGT CTCGATTCTG GATTGCCGGT CAAACACGTG 
GCGCGAGGCT CCGAGATTGG GCGTGGAGCT AACCTCAGTT TCTGCTAGCG 
TCCTTGATCG AAAGATATTT GTAGTAGGAA TGTACGCAGA TGATGAAGAA 
TCTGAATCCA AGAACGACTT CTTTGAGGTG TTGGACACAG AAACACACAC 
TTGGGATCCT CAGCCCTTCA ATTGCAGCGA GACAAAAGAC AAGTTTTTAA 
ACTGCAGAAC CGCATTTATT GACGGAAAGT TCCTCGTGAA ACCTTGGATT 
CATAGAGGGG TGGTTGCTTA CAATTCCAAG GAAAGTAGAT GGGAACCGGT 
TCAAACGAAG ATGGCTATGT CCATGTTTAA TGATTCTTAT TGCCAGATAC 
ACAATGTTAT CTACTTAGCT TTTGACGGAA GGATCAGATG GTATGACGAT 
GCGCTAAACT GTTGGGGAGA CGTCCAGGGT TTGCTAGAAC TGGGTAACAT 
CCCTCATGGT CCTTCTTGTG TTAGATTGGC TGATTATCGT GGAAACATTG 
CGGTTTTCTG GTTCAGATAT TTACCTGATA ATGATGACTA CAAATGGAAG 
ATGATTTGGT GTGCCGAGAT TGCGCTTGAA AGACGCACTA GTTGGGAGAT 
TTGGGGGAAA GTTTTGTGGT TTGATCCTGT TCTTACTGTC CCTGCAGATT 
ATGAGTTTGT CAAAGCTCTT GCTGCTACTG TTTGATCGTG TGTATTTATT 
TGGTAAAATC AAAAAAAAAA AAAAAAAAAA AAAGAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G06570.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther KELCH-RELATED 0.00017
HMMPanther Kelch related 0.00017
ProfileScan F-box domain, cyclin-like 9.444
HMMSmart F-box domain, cyclin-like 0.0001
superfamily Galactose oxidase/kelch, beta-propeller 1.5e-41
Gene3D Kelch-type beta propeller 6.7e-20
HMMPfam Kelch repeat type 2 0.00011
HMMPfam Kelch repeat type 1 0.00014
HMMPfam F-box domain, cyclin-like 1.6e-05

See the detailed result >

AT3G06570.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G51250.1); Has 953 Blast hits to 929 proteins in 27 species: Archae - 0; Bacteria - 11; Metazoa - 4; Fungi - 0; Plants - 934; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-05-O12 introduced

  • F08924 - Specific phenotypes were NOT observed.
  • F15828 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found