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RAFL05-07-A02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02462)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-A02 - full reading 
AGTCTCCGTC TCTTCGCTTC TAGGGTTTCA TCAACCAAAT TCGCTTTCGC 
CGCCTTTCCA CAAGCAATCA TGGTGCTCCA AAACGACATC GATCTCCTTC 
ATCCGCCACC TGAGCTTGAG AAGAGAAAGC ATAAGCTCAA GCGTCTCGTG 
CAATCTCCCA ACTCCTTCTT CATGGATGTT AAGTGTCAGG GATGCTTCAA 
CATAACCACT GTGTTCAGCC ATTCTCAAAC TGTTGTGGTA TGTGGAAACT 
GTCAGACAGT TCTGTGCCAG CCCACCGGTG GTAAAGCGAG GCTACAAGAG 
GGATGCTCTT TCAGGAAGAA GTGAGATTGA GATCTCACGA ATCATTCATC 
CGTTCGCAGA TGTTTTGCTT TAGTAGTTTT GATATCTATG ACGTTTTTCT 
GCTTATGAGA AGATTTTGAA TGCATGATAA AACTACTAGC TGAGTAATTG 
TTCAGAACTT GGTCTTGTTG AAACAGAATA TGCTTTCATT TTAAGTTTAA 
ATCTTTCTCG GATTGCATCA AAAAAAAAAA AAAAAAAAAA AAAAAAAAGA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT5G47930.1 [+] show detail - Zinc-binding ribosomal protein family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribosomal protein, zinc-binding domain 3.3e-21
HMMPfam Ribosomal protein S27e 1.2e-26
PatternScan Ribosomal protein S27e 0
BlastProDom Ribosomal protein S27e 3e-16
HMMPanther Ribosomal protein S27e 1e-54

See the detailed result >

AT5G47930.1

Model type
Protein coding
Short Description
Zinc-binding ribosomal protein family protein
Computational Description
Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ribosomal protein S27 (TAIR:AT3G61110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-A02 introduced

  • F02006 - Specific phenotypes were NOT observed.
  • F05428 - Specific phenotypes were NOT observed.
  • F15819 - Specific phenotypes were NOT observed.
  • F29241 - Specific phenotypes were NOT observed.
  • F30406 - rosette leaf::desaturated green / rosette leaf::abnormal / stem::decreased thickness / cauline leaf::decreased width / cauline leaf::abnormal / fruit::decreased length / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found