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RAFL05-07-A18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01103)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-A18 - full reading 
ATTTACTTTA GTCCTCTCGA ATCCCATAAA GTCCACAACT CTCTCCTTGT 
AGAGAGAGAG ATTTTATGGC GGTGGAGCTC ATGACTCGGA ATTACATCTC 
CGGCGTCGGA GCTGATAGCT TCGCCGTTCA AGAAGCAGCT GCTTCAGGAC 
TCAAAAGTAT CGAAAATTTC ATCGGTTTAA TGTCTCGTGA TAGCTTTAAC 
TCTGATCAGC CATCTTCTTC TTCCGCCTCC GCCTCCGCCT CCGCCGCCGC 
AGATCTTGAA TCAGCTCGTA ACACAACGGC GGACGCGGCT GTTTCAAAGT 
TTAAAAGAGT CATATCTCTC TTAGATCGAA CTCGAACCGG ACACGCCCGG 
TTTAGACGTG CTCCGGTTCA TGTTATTTCT CCGGTTCTTT TACAAGAAGA 
ACCAAAAACG ACGCCGTTTC AGTCTCCTCT TCCTCCTCCG CCGCAAATGA 
TCCGAAAAGG TTCGTTTTCT TCATCGATGA AAACGATTGA TTTCTCATCT 
CTCTCCTCTG TAACAACGGA ATCAGACAAC CAGAAGAAGA TTCATCATCA 
TCAACGTCCC TCTGAAACGG CGCCGTTTGC GTCTCAAACT CAAAGCCTCT 
CCACGACGGT CTCGTCTTTC TCAAAATCAA CAAAGAGAAA ATGTAACTCT 
GAGAATCTTC TCACCGGAAA ATGCGCTTCC GCTTCTTCCT CCGGTCGTTG 
TCATTGCTCG AAGAAAAGAA AGATAAAACA GAGGAGAATA ATTAGGGTTC 
CGGCGATAAG TGCAAAAATG TCCGATGTAC CACCGGACGA TTATTCATGG 
AGGAAATACG GACAAAAACC AATTAAAGGA TCTCCACATC CAAGAGGATA 
TTATAAGTGT AGTAGCGTAA GAGGTTGTCC AGCACGTAAA CATGTTGAGA 
GAGCAGCTGA TGATTCGTCC ATGTTGATTG TTACTTATGA AGGAGATCAT 
AATCATTCTC TCTCCGCCGC TGATCTCGCC GGAGCCGCCG TTGCTGATCT 
TATTTTGGAA TCGTCTTGAA AAGAACAAAT CTTTATTTAA GGCTTTTATA 
ATATAAATTT AGATCCTTAC TTAGTGAAGT ACTCAAACTA TGAATGAAAT 
CAATGTAATC AAAATCAAAA AGCTTTTGCT AAAAAAGAAA AAAAAAAAAA 
AAA

Gene models with high sequence identity

  1. AT2G23320.1 [+] show detail - WRKY DNA-binding protein 15
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan DNA-binding WRKY 30.607
Gene3D no description 1.1e-24
HMMSmart DNA-binding WRKY 1.7e-37
HMMPfam DNA-binding WRKY 4e-29
HMMPfam Transcription factor, WRKY, Zn-cluster 1.9e-18

See the detailed result >

AT2G23320.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 15
Curator Summary
Encodes WRKY DNA-binding protein 15 (WRKY15).
Computational Description
WRKY DNA-binding protein 15 (WRKY15); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 3350 Blast hits to 2896 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 3315; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-A18 introduced

  • F21047 - Specific phenotypes were NOT observed.
  • F28606 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found