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  3. RAFL05-07-D07

RAFL05-07-D07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02466)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-D07 - full reading 
GTTCATCAGA TCTACTACAA TCTCTCTTTT TCTTCGGGTA TGGAGGGCCA 
ACGAGGCAGT AATTCTTCGT TGAGCTCTGG CAATGGTACC GAAGTCGCCA 
CCGACGTTTC TTCTTGCTTC TATGTTCCCA ATCCCTCTGG AACCGATTTC 
GATGCCGAGT CGTCTTCTCT TCCTCCTCTC TCCCCAGCTC CTCAAGTGGC 
ATTGTCAATT CCTGCGGAGC TTGCCGCCGC CATTCCCCTC ATCGATCGCT 
TCCAGGTTGA AGCTTTTCTG CGGCTAATGC AGAAACAAAT CCAGTCTGCT 
GGGAAGCGTG GCTTCTTCTA TTCCAAAAAG TCCTCTGGCT CCAATGTCCG 
CGAGCGCTTC ACATTTGAGG ATATGCTTTG CTTTCAAAAG GATCCAATCC 
CCACATCTCT CCTCAAGATT AACAGCGATC TCGTCAGCCG TGCTACCAAG 
TTGTTTCATC TCATCTTAAA ATATATGGGT GTTGATTCAT CTGATCGATC 
TACGCCTCCC AGTTTAGATG AACGCATTGA CCTCGTTGGA AAGCTCTTCA 
AAAAAACTTT GAAGCGTGTT GAACTCAGGG ACGAACTTTT TGCCCAAATC 
TCCAAACAGA CTAGACATAA TCCTGACAGG CAATACTTGA TCAAAGCTTG 
GGAATTGATG TACTTATGTG CCTCCTCTAT GCCTCCTAGC AAAGATATCG 
GTGGATATCT ATCTGAGTAT ATTCATAATG TCGCACACGA TGCAACTATT 
GAACCGGATG CTCAGGTTCT TGCTGTTAAC ACTTTGAAAG CTTTAAAGCG 
CTCTATCAAA GCTGGTCCTA GGCACACCAC ACCTGGTCGT GAAGAAATTG 
AAGCCCTTTT GACCGGTAGA AAGCTCACAA CCATTGTCTT CTTTCTCGAT 
GAAACTTTTG AAGAAATTTC ATATGACATG GCTACCACAG TGTCTGATGC 
TGTTGAGGAG CTAGCTGGAA CAATTAAACT ATCAGCTTTC TCTAGCTTTA 
GTTTGTTTGA ATGTCGTAAA GTTGTTTCAA GTTCTAAATC ATCTGATCCC 
GGAAATGAGG AATATATAGG ATTGGATGAT AACAAGTATA TTGGAGATCT 
CCTCGCAGAA TTTAAAGCTA TTAAAGATCG AAATAAAGGA GAGATACTAC 
ACTGCAAACT GGTATTTAAA AAAAAATTAT TCCGAGAGTC TGATGAAGCT 
GTAACAGATC TGATGTTTGT GCAACTTTCG TATGTTCAAC TGCAACATGA 
CTATTTGCTA GGAAACTATC CTGTTGGGAG GGACGATGCT GCACAGCTTT 
GTGCCTTGCA AATTCTTGTT GGGATTGGGT TTGTCAATAG TCCAGAGTCA 
TGCATTGATT GGACATCACT TCTTGAGCGG TTTTTGCCAA GACAAATAGC 
AATAACCCGA GCAAAGCGTG AATGGGAATT GGATATCCTT GCTCGCTACC 
GTTCAATGGA GAACGTGACC AAAGATGATG CAAGACAACA ATTTCTACGG 
ATACTGAAGG CACTGCCATA CGGGAATTCA GTTTTTTTTA GCGTACGCAA 
GATAGATGAT CCGATCGGTC TTTTACCTGG GCGAATCATT TTGGGTATCA 
ACAAACGTGG GGTTCACTTT TTTCGACCGG TTCCTAAAGA ATATCTGCAC 
TCTGCTGAAC TACGTGACAT CATGCAATTT GGCAGCAGTA ACACTGCTGT 
CTTTTTCAAA ATGAGAGTCG CTGGTGTTCT TCACATATTT CAGTTCGAGA 
CAAAACAGGG AGAAGAAATT TGTGTTGCTT TGCAAACACA TATAAATGAT 
GACATGTTGC GTCGTTACTC CAAAGCTCGA TCTGCTGCCA ATAGCTTGGT 
TAATGGAGAT ATATCTTGTA GTTCTAAGCC GCAAAATTTT GAAGTGTATG 
AAAAACGTTT GCAAGATTTG TCTAAGGCTT ATGAAGAGTC CCAAAAGAAG 
ATTGAGAAGT TGATGGATGA ACAACAAGAG AAAAATCAGC AAGAAGTTAC 
TCTGCGTGAA GAGTTAGAAG CTATACACAA TGGTTTGGAG CTTGAAAGGA 
GAAAATTGTT GGAGGTTACT TTAGACCGAG ATAAACTTAG GTCATTGTGT 
GACGAGAAGG GAACAACTAT TCAATCCTTG ATGTCTGAAC TGCGAGGAAT 
GGAAGCAAGG TTGGCAAAGT CGGGCAACAC AAAATCAAGT AAAGAGACAA 
AATCAGAATT AGCCGAAATG AATAATCAGA TATTATACAA GATCCAAAAG 
GAGTTAGAAG TTCGAAATAA GGAATTGCAT GTCGCAGTTG ATAATTCAAA 
GAGGTTGTTG AGTGAAAACA AGATATTGGA GCAAAATCTC AATATTGAAA 
AGAAGAAAAA AGAGGAGGTT GAAATTCATC AAAAGAGATA TGAACAAGAA 
AAAAAGGTGT TAAAGCTTCG AGTTTCTGAA CTTGAAAATA AGCTTGAAGT 
ACTTGCTCAA GACTTGGATA GTGCTGAGTC TACGATTGAA AGTAAGAATT 
CTGACATGCT GCTGTTGCAA AATAACTTGA AAGAACTTGA GGAGTTAAGA 
GAAATGAAAG AGGACATTGA CAGAAAAAAT GAGCAAACAG CTGCCATTTT 
GAAAATGCAA GGAGCCCAAC TTGCTGAGCT AGAAATACTT TATAAGGAAG 
AACAAGTTTT AAGGAAAAGA TACTATAATA CCATAGAAGA TATGAAAGGG 
AAGATTAGAG TTTATTGTCG AATAAGACCT CTAAATGAAA AAGAGAGTTC 
AGAGAGGGAA AAACAAATGC TGACAACTGT GGATGAGTTT ACTGTTGAAC 
ATCCATGGAA AGACGACAAA AGAAAGCAAC ACATATATGA TCGCGTATTT 
GACATGCGTG CTAGTCAAGA TGATATCTTT GAAGACACAA AGTATTTGGT 
ACAGTCGGCT GTAGATGGGT ATAACGTTTG CATCTTTGCA TATGGTCAAA 
CTGGTTCTGG AAAAACTTTC ACTATATATG GGCATGAGAG CAATCCTGGA 
CTCACACCTC GAGCTACAAA GGAACTGTTC AACATATTAA AGCGAGATAG 
CAAGAGATTT TCATTTTCTC TAAAGGCATA TATGGTGGAA CTTTATCAAG 
ACACACTTGT AGACCTTTTG TTACCAAAAA GTGCAAGACG CTTGAAACTA 
GAGATTAAAA AAGATTCAAA GGGAATGGTC TTTGTAGAGA ATGTGACAAC 
TATTCCTATA TCAACTTTGG AGGAACTGCG AATGATTCTT GAACGGGGAT 
CGGAACGACG ACATGTTTCT GGAACAAATA TGAATGAAGA AAACTCAAGA 
TCTCACCTCA TATTATCAGT TGTTATTGAA AGTATTGATC TTCAAACCCA 
GTCTGCTGCG AGGGGCAAGC TGAGTTTTGT GGATCTTGCT GGTTCTGAGA 
GAGTTAAAAA GTCGGGCTCA GCTGGTTGTC AACTCAAAGA AGCTCAAAGT 
ATCAACAAAT CACTTTCTGC ATTAGGTGAT GTTATTGGTG CTTTATCTTC 
TGGCAACCAG CATATTCCTT ATAGGAATCA CAAGCTAACG ATGTTGATGA 
GCGATTCATT GGGCGGCAAT GCCAAGACGT TAATGTTTGT TAATGTGTCT 
CCAGCCGAAT CAGATTTGGA CGAGACGTAC AATTCTCTTC TATATGCATC 
GAGAGTGAGA ACGATCGTGA ATGATCCCAG CAAACATATA TCATCCAAAG 
AGATGGTGCG ATTGAAGAAG TTGGTAGCAT ACTGGAAAGA GCAAGCCGGT 
AAAAAAGGTG AGGAAGAAGA CTTGGTGGAT ATTGAGGAAG ATCGTACACG 
AAAAGATGAG GCAGATAGTT GAAGAAAGCT GACATGAAAT TCGTCTAGGT 
GAAATTGAGA CTATAGTATC ACTGGTTTTC ACCATTCTTT TTGTAGGAAG 
TTCCTGCTTT ATAGTAGAGT TTCTATCGAA GAGTAGTCCT ATATGTCTCA 
AACTTTCTCT CTTTTGATGA GATCTTCATT ACAAGAAATG AAAAAAAAAA 
AAAAAATTCG TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT5G65930.2 [+] show detail - kinesin-like calmodulin-binding protein (ZWICHEL)
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
ProfileScan FERM domain 34.923
ProfileScan Kinesin, motor domain 51.459
ProfileScan MyTH4 domain 51.607
Gene3D FERM/acyl-CoA-binding protein, 3-helical bundle 1.2e-20
Gene3D Kinesin, motor domain 4.4e-119
HMMPfam Kinesin, motor domain 2.8e-103
HMMPfam MyTH4 domain 3.7e-39
HMMPfam FERM central domain 3.1e-11
HMMPfam FERM, N-terminal 1.2e-08
Coil coiled-coil 0
Coil coiled-coil 0
superfamily P-loop containing nucleoside triphosphate hyd 3.8e-117
superfamily FERM central domain 2.5e-21
superfamily Prismane-like 9e-09
superfamily PH domain-like 1.9e-06
PatternScan Kinesin, motor region, conserved site 0
HMMPanther CALMODULIN BINDING PROTEIN 3.1e-284
HMMPanther KINESIN HEAVY CHAIN 3.1e-284
FPrintScan Kinesin, motor domain 2.1e-38
FPrintScan Kinesin, motor domain 2.1e-38
FPrintScan Kinesin, motor domain 2.1e-38
FPrintScan Kinesin, motor domain 2.1e-38
HMMSmart MyTH4 domain 1.1e-51
HMMSmart Band 4.1 domain 7.6e-38
HMMSmart Kinesin, motor domain 3e-162

See the detailed result >

AT5G65930.2

Model type
Protein coding
Short Description
kinesin-like calmodulin-binding protein (ZWICHEL)
Curator Summary
encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.
Computational Description
ZWICHEL (ZWI); FUNCTIONS IN: microtubule motor activity, calmodulin binding; INVOLVED IN: trichome branching, pollen germination; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FERM central domain (InterPro:IPR019748), Prismane-like (InterPro:IPR011254), MyTH4 domain (InterPro:IPR000857), Kinesin, motor domain (InterPro:IPR001752), FERM, N-terminal (InterPro:IPR018979), Band 4.1 domain (InterPro:IPR019749), Kinesin, motor region, conserved site (InterPro:IPR019821), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), FERM domain (InterPro:IPR000299); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT2G22610.1); Has 92267 Blast hits to 53660 proteins in 2386 species: Archae - 1115; Bacteria - 10663; Metazoa - 44616; Fungi - 7060; Plants - 5081; Viruses - 192; Other Eukaryotes - 23540 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-D07 introduced

  • F15123 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found