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  3. RAFL05-07-D14

RAFL05-07-D14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01119)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-D14 - full reading 
ACCATATACC CACACTCACA AGTCACAACT CAAATAATCT TTGTCTTCCT 
CCTACAAATA TGGGGTTTTC TCCTTCATTT TCTTGCAGTG CTATTGGAGC 
CCTAATTTTG GGTTGCCTTC TGCTTCAAGC ATCAAACTCT AATGCTCAGT 
TGAGGCCTGA TTTCTACTTC GGGACGTGCC CATTTGTTTT TGATATCATT 
GGAAATATCA TCGTCGATGA ACTGCAGACT GATCCTCGTA TTGCCGCGAG 
CCTCCTTCGT CTTCACTTTC ACGACTGCTT TGTTCGTGGT TGTGATGCAT 
CGATCTTGCT TGACAATTCC ACATCATTCC GGACTGAGAA AGATGCTGCT 
CCGAACGCAA ATTCGGCTCG AGGGTTTAAT GTCATAGATA GAATGAAAGT 
AGCCCTTGAG AGAGCTTGCC CAGGAAGAGT CTCTTGTGCA GATATTCTCA 
CCATCGCCTC TCAAATATCA GTGCTTTTGT CGGGAGGTCC ATGGTGGCCG 
GTTCCGTTGG GGAGGAGAGA CAGTGTAGAA GCTTTCTTCG CTCTGGCTAA 
TACAGCTCTG CCCTCTCCGT TTTTCAATCT TACTCAACTT AAAACAGCCT 
TTGCTGACGT TGGCCTAAAC CGCACTTCCG ATCTAGTTGC TCTTTCCGGT 
GGTCACACAT TTGGAAGAGC ACAATGCCAG TTCGTGACGC CTCGTCTCTA 
CAACTTCAAT GGTACAAACA GTCCAGACCC AAGTCTGAAC CCAACTTACC 
TTGTCGAACT CCGTCGATTG TGTCCTCAAA ACGGAAACGG CACCGTTCTG 
GTCAACTTCG ATGTCGTGAC TCCAGATGCT TTCGATAGTC AATACTACAC 
CAACCTTCGT AATGGGAAAG GTCTTATTCA GAGTGACCAG GAACTCTTTT 
CGACTCCAGG AGCCGATACG ATCCCTTTAG TAAACCAATA CAGCAGCGAC 
ATGTCCGTGT TCTTTCGAGC ATTCATTGAC GCAATGATTA GGATGGGAAA 
TCTTAGACCT TTGACTGGAA CTCAAGGAGA GATTAGACAA AATTGTAGGG 
TTGTGAATCC ACGAATTAGG GTTGTGGAGA ACGACGATGG TGTTGTGAGT 
TCTATCTGAT TATGCATGTT GCCATGTTGG GGATATATAT ATGGATATGT 
AAGAAAGTAT AAAATGCGCA CGTGAGAACA ATTTCGACTA ATAAAAGTTT 
TCACGAGTTA TGAGATTTAT GAAATTGGTA TCAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT2G38380.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Haem peroxidase, plant/fungal/bacterial 7.4e-69
Gene3D no description 2.2e-59
PatternScan Peroxidases heam-ligand binding site 0
PatternScan Peroxidase, active site 0
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Plant peroxidase 7.7e-67
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
ProfileScan Haem peroxidase, plant/fungal/bacterial 80.697
superfamily Haem peroxidase 1.9e-115

See the detailed result >

AT2G38380.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to zinc ion, response to salt stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38390.1); Has 4386 Blast hits to 4361 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 86; Plants - 4250; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-D14 introduced

  • F06505 - Specific phenotypes were NOT observed.
  • F22033 - seed::increased size / seed::increased length
  • F30421 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found