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RAFL05-07-D16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00969)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-D16 - full reading 
ATAAACAGAG TTCTCACACC AATACAAAAG AGACCATCAC CGTGAGAAAG 
AGAAGAAGAA CAAAAAAGTT AGCCATGGCA TCAAGAAGAG TTTCTTCGCT 
GCTCTCTCGC TCTTTCATGT CCTCCTCACG TTCTATCTTC TCTCTTAGAG 
GCATGAACAG AGGAGCTCAA AGATACAGTA ACCTCGCTGC TGCTGTCGAA 
AACACTATTA CTCCACCAGT GAAAGTTGAA CACACACAGC TTCTAATCGG 
TGGAAGATTC GTTGATGCAG TGTCAGGAAA AACTTTCCCT ACTTTGGATC 
CAAGAAATGG AGAAGTGATT GCTCAAGTGT CTGAAGGTGA TGCAGAAGAC 
GTGAACCGCG CGGTTGCAGC TGCACGAAAG GCTTTTGATG AAGGACCATG 
GCCTAAAATG ACAGCTTATG AGAGATCAAA GATACTGTTT CGTTTCGCTG 
ATTTAATCGA GAAACATAAT GATGAGATTG CTGCTCTTGA GACTTGGGAT 
AATGGGAAAC CTTATGAACA ATCTGCTCAA ATTGAAGTAC CAATGCTTGC 
TAGGGTGTTC CGGTACTATG CTGGTTGGGC AGACAAGATA CATGGAATGA 
CAATGCCAGG AGATGGTCCA CACCATGTGC AGACCTTACA TGAGCCTATA 
GGAGTCGCTG GACAAATCAT CCCATGGAAC TTCCCTCTTC TCATGCTTTC 
TTGGAAACTT GGACCAGCTT TAGCTTGCGG TAACACCGTT GTTCTCAAAA 
CTGCTGAGCA AACTCCTCTA TCTGCTCTTC TTGTTGGGAA ACTACTTCAT 
GAGGCTGGAC TTCCTGATGG AGTTGTGAAT ATAGTTTCTG GATTTGGGGC 
TACTGCTGGT GCAGCTATAG CTAGTCACAT GGACGTTGAT AAGGTTGCTT 
TCACCGGGTC TACTGATGTT GGGAAGATTA TTCTTGAGTT AGCTTCAAAA 
AGCAACCTTA AGGCAGTGAC TCTTGAGCTT GGAGGAAAGT CACCATTCAT 
TGTATGTGAA GATGCTGATG TGGATCAGGC CGTTGAGCTT GCACATTTCG 
CTTTGTTCTT TAACCAGGGA CAATGTTGTT GTGCTGGTTC GCGTACATTT 
GTACATGAAC GTGTGTATGA TGAGTTTGTA GAGAAAGCTA AAGCTCGTGC 
ACTCAAGCGA AATGTTGGAG ATCCCTTCAA GTCAGGCATT GAGCAAGGTC 
CCCAGGTAGA CTCAGAGCAA TTCAACAAAA TCCTGAAGTA CATCAAACAT 
GGAGTTGAGG CTGGAGCCAC ATTACAAGCT GGAGGTGACA GGCTTGGTTC 
CAAGGGTTAC TACATTCAAC CTACTGTCTT CTCAGATGTG AAAGATGACA 
TGCTCATAGC AACAGACGAG ATTTTCGGGC CGGTTCAAAC CATACTGAAA 
TTCAAGGATC TTGATGAGGT GATTGCAAGG GCCAACAACT CAAGGTACGG 
TTTAGCTGCT GGAGTGTTCA CACAGAATCT TGACACAGCA CACCGGCTGA 
TGCGAGCACT CAGAGTTGGG ACTGTTTGGA TCAACTGTTT TGATGTACTT 
GATGCATCAA TTCCATTTGG AGGGTATAAG ATGAGTGGCA TTGGTAGAGA 
GAAAGGTATC TACAGTCTCA ACAATTACTT GCAAGTCAAG GCTGTTGTTA 
CTTCCCTCAA GAACCCTGCC TGGCTCTAAA CCATACCAGG TGGTTACACT 
TATTTCTCGA GTTTGGTTTA TGATTTGCAC TTTTGCTTTG AAAACCTGGA 
GTTGTACTGT GTCTCTAGGA TTTCTAGATT TTGAGAGTAA TTTATCTTCA 
ATACATTTTG CAAATAAAGC TACATGACAA TGTGTGATTA ATAAACACAA 
ACTCTTATCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT1G23800.1 [+] show detail - aldehyde dehydrogenase 2B7
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
PatternScan Aldehyde dehydrogenase, conserved site 0
PatternScan Aldehyde dehydrogenase, conserved site 0
HMMPanther ALDEHYDE DEHYDROGENASE 2.2e-294
HMMPanther Aldehyde dehydrogenase 2.2e-294
superfamily Aldehyde/histidinol dehydrogenase 1e-189
Gene3D Aldehyde dehydrogenase, N-terminal 2e-109
HMMPfam Aldehyde dehydrogenase 2.5e-183

See the detailed result >

AT1G23800.1

Model type
Protein coding
Short Description
aldehyde dehydrogenase 2B7
Curator Summary
Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product.
Computational Description
aldehyde dehydrogenase 2B7 (ALDH2B7); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 60835 Blast hits to 60447 proteins in 2994 species: Archae - 474; Bacteria - 34339; Metazoa - 2649; Fungi - 2135; Plants - 1675; Viruses - 0; Other Eukaryotes - 19563 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-D16 introduced

  • F02040 - seed::increased size / seed::increased length
  • F07333 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found