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  3. RAFL05-07-E15

RAFL05-07-E15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01096)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-E15 - full reading 
CTCTCTGCTC TTTGTTGATC TGTCTGTGTG GGATTCTTCC TTTAGTTCCT 
CTGTTGATCT ATCCAATCGA ATCTTACGAA AATTTTCGAG TGAAGATGAG 
GTCGCTTCAA GCACCGGTTG TTTGCCCTAG TGTTCGTCCC AGACAATTGG 
GTGTCTCTGC TTTACTTGTC AACTGCTCTG TTTCGAAAAC TAGGAGTCTC 
AGAAAACAAT TCTGGGGTAA CCAGACCAAA AATGACAAGT CTCAGGCTGC 
TACAGTGAAT CTTCGTCTGC ATCTTCGGAG GTATAAGAGT ATCAAATGTC 
TTTTCAGCTC GCACTCTGAT GGTACCGGAA GCACAGCAGA GAATTTCAAC 
GAGAACGATG AGGATTATGT CAAGTCTAGT GTATTGGAAG CTGTTGAGGT 
AAAAAGTGGA CCAGATGGTT TCATGGTGAA GATGAAGGAT GGGAGGCAAC 
TTCGATGTGT CCACAATAAT CCTCAAGGAG GGAATCTTCC AAATTATGCT 
CCACATTCTG CAATTGTGCT GAAAATGGAA GATGGAACTG GTCTTCTTCT 
CCCCATTATC GTCTTGGAGA TGCCTAGTGT GTTACTTATG GCAGCAATGA 
CAAATGTTCA AATAGCAAGG CCCACTATGT ATCAAGTGGT GAAGGACATG 
GTAGACAAAA TGGGTTATGA GGTTAGGCTT GTTAGAGTTA CCACAAGAGT 
TCACGAGGCA TATTTCGCAG AGTTATACCT TTCAAAGGTG GGGGATAAGT 
CGGATTGTGT CAGCTTCGAT CTTCGTCCTT CTGATGCAAT TAATATAGCT 
GTTAGATGCA AGGTACCTAT TCAAGTCAAC AAGTATCTAG CTTATAGTGA 
TGGAATGAGA GTCATCGATT CCGGAAAGCT ATCAAAGCAA ACACCTGCTT 
CTGATGGTTT ATTGTTTACT GAACTAGACC GGCCAAATGG TCAGCCTTGT 
TTTGATACAA AAGAGTTCGA TCTAGTAAGG AACATGATGC AAGCTGTTGA 
TGAAGAACGG TATGATGAAG CCGCTGAGTG GAGAGACAAG CTTGGCAAGT 
TTCAGGCAAA ACGCAAATTA AGGAAATACA CATGACAGCT CGCAGACGGG 
AGTGTTTTTA ATACATAATT TATGTAAATA ATAAAGAAGC CATTGCCATT 
TGCCAGAAGT TGTGATCATG AAGAAAAATA TCTCTCTCGT ATGAGATATA 
CTTTTCTCTA TCGACACTTG TGCACGTAGT TGATTCTCAA GGAACGGACA 
AAATAAAAAT GTTATTTTAT AATTGTAGCG TGATGGTGAT GTGATGTGTA 
CATATACATT AATCTTCTGT AATAATATAT GGTAAGCCTA CGCTTTCTCA 
ATTACAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G19660.1 [+] show detail - Wound-responsive family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF151 4.4e-20
HMMPfam UvrB/UvrC protein 1e-05
superfamily Protein of unknown function DUF151 2.7e-37

See the detailed result >

AT1G19660.1

Model type
Protein coding
Short Description
Wound-responsive family protein
Computational Description
Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to wounding, nucleotide-excision repair; EXPRESSED IN: ovule; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3); Has 886 Blast hits to 886 proteins in 308 species: Archae - 44; Bacteria - 551; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-E15 introduced

  • F11104 - Specific phenotypes were NOT observed.
  • F26101 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found