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RAFL05-07-F16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01191)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-F16 - full reading 
ACTCTCAAAA TCATCTTCTT CACCCAAAAA CCCCTAAAAG CCTTATCCCT 
TCTTCTTCCC ATGGCTGCTT CAGCTTCGTC TCTCGCTCTC TCTTCCTTCA 
ACCCTAAATC TCTTCCTTTC GGCGTCTCCA GACCTGCCTC CGTTTCCCTC 
TTATCTCCTT CCCTCTCCTT TAAACTCAAT TCCGACTCCG TTTCCTTCTC 
CATCGCCGCC AAATGGAACT CTCCCGCTTC TCGCTTCGCC CGTAACGTTG 
CGATTACCTC AGAGTTCGAG GTGGAAGAAG ATGGTTTCGC TGACGTCGCT 
CCGCCAAAAG AGCAATCTTT CTCTGCTGAC CTTAAACTCT TCGTTGGTAA 
CCTTCCTTTC AACGTTGACA GTGCTCAGCT CGCTCAGCTC TTTGAGAGTG 
CCGGAAATGT TGAGATGGTT GAGGTAATCT ATGACAAAAT TACAGGAAGA 
AGCAGAGGTT TTGGATTCGT GACTATGTCT TCAGTTTCTG AAGTTGAGGC 
AGCTGCTCAG CAGTTCAATG GCTATGAGTT GGATGGTAGA CCTTTGAGAG 
TCAATGCTGG TCCCCCACCA CCAAAGAGGG AAGATGGTTT CTCCAGAGGA 
CCTAGGAGCA GCTTTGGAAG CTCAGGTTCT GGATATGGAG GAGGTGGTGG 
TTCTGGTGCT GGTTCAGGAA ACCGTGTTTA TGTGGGTAAC CTCTCTTGGG 
GAGTTGATGA CATGGCTCTT GAGAGTTTGT TCTCGGAGCA AGGAAAGGTT 
GTTGAGGCCA GAGTCATCTA CGACAGGGAC AGTGGTCGAT CCAAGGGTTT 
TGGATTTGTG ACATACGACT CTTCTCAAGA GGTCCAAAAT GCCATCAAGT 
CCTTGGATGG TGCTGATTTG GACGGTAGAC AAATTAGAGT CTCGGAAGCT 
GAGGCTAGGC CTCCAAGGCG CCAATATTGA GCACCAATCT ATGACTTCCT 
ATTCTCAAAA ACGCATATTC TGGAGGGCGC TTCGAAGTAA AGAGGGTTTG 
TGAGATGATG GCAGTTTCAG ACGGTACTAA GCTCTTAGCT TCGCCTATGT 
TTGTTGCCTT GGATGCAAGA AGGTCGTAAA GGAATGGTCT TTTTTTTTTT 
GAGAAACGTA TAATTAAGAT AGAAACTGGA GAGACCATGT TCTTGTCTGT 
CTGAATGCTG CCATTGACTG CTTCGCTTTG GTTTTGATTC AATTTTTTTT 
TCTCTCTATA TCGTGGTCTC TTCTTCCTTA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT2G37220.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart RNA recognition motif, RNP-1 5.7e-28
HMMSmart RNA recognition motif, RNP-1 1.8e-28
HMMPfam RNA recognition motif, RNP-1 1.7e-20
HMMPfam RNA recognition motif, RNP-1 1.2e-21
HMMPanther RIBONUCLEOPROTEIN, CHLOROPLAST 1.2e-80
HMMPanther RNA-BINDING PROTEIN 1.2e-80
Gene3D Nucleotide-binding, alpha-beta plait 3.7e-31
Gene3D Nucleotide-binding, alpha-beta plait 5.4e-27
ProfileScan RNA recognition motif, RNP-1 19.041
ProfileScan RNA recognition motif, RNP-1 20.525
superfamily RNA-binding domain, RBD 8.2e-28
superfamily RNA-binding domain, RBD 5.7e-26

See the detailed result >

AT2G37220.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Curator Summary
Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 (TAIR:AT3G53460.3); Has 997478 Blast hits to 497195 proteins in 22066 species: Archae - 21542; Bacteria - 603238; Metazoa - 188798; Fungi - 28200; Plants - 60491; Viruses - 70820; Other Eukaryotes - 24389 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-F16 introduced

  • F10220 - Specific phenotypes were NOT observed.
  • F13932 - seed::increased size / seed::increased length
  • F15229 - Specific phenotypes were NOT observed.
  • F23404 - rosette leaf::desaturated green / rosette leaf::abnormal / stem::desaturated green / seed::present in fewer numbers in organism / rosette leaf::desaturated green / rosette leaf::abnormal / fruit::abnormal
  • F27002 - Specific phenotypes were NOT observed.
  • F27732 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found