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RAFL05-07-G16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01133)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-G16 - full reading 
AAACAAAAAC TCGTGGAGGA GATATGCAAT TGCTGACGCT AAATCCGGCG 
GCCATTTCCA GGACGCCGCC GCAAGCCATA GACCCTTCCT CATCCTCGAG 
TCTTCTTCTT CCTTTTCCTC AGATTTTGAG CTCCCAACGC GCTCTTGGTC 
TTGTAGCTAG GCCTTGTAAT CCACTTCGAC GAGGATTATC TAGGTTTTTA 
TCAAGTCGAC AGCTTTTCCG ACGATCCAAA GTTGTCAAGG CAGTAGCAAC 
CCCAGACCCC ATCTTGGAAG TACCTTTAAC TGAGGAAAAT GTAGAAAGCG 
TTTTGGATGA AATCCGACCT TACCTTATGT CTGATGGTGG TAATGTGGCA 
TTACATGAGA TCGATGGAAA TATTGTGCGG GTTAAGCTGC AGGGAGCATG 
CGGATCATGT CCAAGTTCTA CTATGACAAT GAAGATGGGT ATTGAGCGTC 
GTCTAATGGA AAAGATCCCT GAAATAGTGG CTGTAGAAGC TCTTCCAGAT 
GAAGAGACTG GCCTTGAACT GAATGAGGAA AACATTGAAA AGGTGCTGGA 
AGAAATCAGG CCTTACTTAA TCGGAACAGC AGATGGATCG CTTGATCTAG 
TGGAGATTGA AGATCCAATC GTGAAGATAA GAATCACAGG ACCTGCAGCT 
GGAGTCATGA CAGTTCGTGT AGCAGTCACT CAGAAACTAA GAGAGAAAAT 
TCCATCAATC GCAGCTGTTC AACTTATATA GAAACAACAA CTCTTCTTGT 
ATGCTTTGTA TTAGCTCCCT TGTATAGTTG TTGTGCATAG ATTATGTGTT 
TTGTTGACAT TTGCTATTTG TCCTCAAATA AGTTTTCAAC ATTTTTGTTT 
TACTTAGAAA AAAAGTCCTT ATTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G49940.1 [+] show detail - NIFU-like protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 5e-30
BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 6e-20
HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 3.3e-27
HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 0.00000049
HMMPanther IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELA 1.2e-62

See the detailed result >

AT5G49940.1

Model type
Protein coding
Short Description
NIFU-like protein 2
Curator Summary
Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
Computational Description
NIFU-like protein 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: chloroplast organization, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU domain protein 3 (TAIR:AT4G25910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-G16 introduced

  • F09108 - Specific phenotypes were NOT observed.
  • F09314 - seed::decreased size
  • F10451 - Specific phenotypes were NOT observed.
  • F12038 - Specific phenotypes were NOT observed.
  • F12110 - Specific phenotypes were NOT observed.
  • F19215 - rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::decreased size / sporophyte vegetative stage::decreased speed
  • F20431 - Specific phenotypes were NOT observed.
  • F24114 - Specific phenotypes were NOT observed.
  • F24924 - Specific phenotypes were NOT observed.
  • F26916 - Specific phenotypes were NOT observed.
  • F29046 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found