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Full-length cDNAs
RAFL05-07-H16

RAFL05-07-H16

RIKEN Arabidopsis Full-length cDNAs

ACGCCGCTCA TTTTTAGGGT TTCAGATATA GGCAGATTCT CACATTTGCA 
AACATGACGA CTCAGATCAG CAAGAAGAGA AAGTTTGTAG CGGACGGTGT 
GTTCTACGCT GAATTGAATG AGGTTCTTAC AAGAGAGCTA GCAGAGGATG 
GTTACTCTGG TGTTGAGGTT AGGGTTACTC CTATGAGGAC TGAGATTATC 
ATCAGAGCTA CACGTACTCA GAATGTTCTC GGTGAGAAGG GGAGGAGAAT 
TAGGGAATTG ACTTCCCTTG TTCAGAAGAG ATTCAAGTTT CCAGTTGACA 
GTGTTGAGCT TTATGCCGAG AAGGTTAACA ACAGAGGTCT CTGTGCCATC 
GCTCAGGCTG AGTCTTTACG TTACAAGCTT CTTGGTGGTC TCGCTGTTCG 
TAGGGCTTGC TATGGTGTGT TGAGGTTTGT TATGGAGAGT GGAGCTAAGG 
GATGCGAGGT TATCGTGAGT GGAAAGCTTC GTGCTGCCAG AGCCAAGTCT 
ATGAAGTTCA AAGATGGCTA CATGGTGTCA TCTGGTCAAC CAACTAAGGA 
ATACATAGAC TCTGCAGTGA GACATGTTTT GCTTAGACAA GGTGTGTTGG 
GAATCAAGGT GAAGGTTATG CTTGATTGGG ACCCTAAGGG CATATCAGGA 
CCAAAGACAC CATTGCCTGA TGTTGTGATC ATTCATTCTC CTAAAGAAGA 
AGAGGCCATC TATGCACCTG CTCAGGTTGC TGCCCCGGCT GCTCTCGTAG 
CAGATGCACC ACTCACAGCC GTAGATTACC CTGCGATGAT CCCAGTCGCC 
TAAAAGAATC CTTTGTACTA GTCGATGTGA TTTTGTTTTC AACTGTTCTT 
GCTCTTTTGA CAGATTATAG CTTCTCGTAT CTTCGAATCA GACACGTTTC 
CTCTGTTCTT ATTCGAAAAT TATCTCAAGT TTCCATTGTG GAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

AT3G53870.1 [+] show detail - Ribosomal protein S3 family protein
E-value: 0; Score: 99.89

InterPro Scan Digest

Program	Description	E-value
ProfileScan	K Homology, type 2	11.052
superfamily	Ribosomal protein S3, C-terminal	2.3e-28
superfamily	K Homology, prokaryotic type	2.5e-16
HMMTigr	Ribosomal protein S3, eukaryotic/archaeal	4.3e-98
HMMPfam	Ribosomal protein S3, C-terminal	2.5e-17
HMMPfam	K Homology, type 2	3.8e-09
Gene3D	Ribosomal protein S3, C-terminal	2.8e-19
HMMPanther	40S RIBOSOMAL PROTEIN S3	6e-109
HMMPanther	30S/40S RIBOSOMAL PROTEIN S3	6e-109

See the detailed result >

AT3G53870.1

Model type: Protein coding
Short Description: Ribosomal protein S3 family protein
Computational Description: Ribosomal protein S3 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to salt stress, translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, membrane; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), K Homology (InterPro:IPR004087), Ribosomal protein S3, C-terminal (InterPro:IPR001351), Ribosomal protein S3, eukaryotic/archaeal (InterPro:IPR005703); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3 family protein (TAIR:AT2G31610.1); Has 5912 Blast hits to 5911 proteins in 2101 species: Archae - 256; Bacteria - 3650; Metazoa - 372; Fungi - 151; Plants - 167; Viruses - 0; Other Eukaryotes - 1316 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-07-H16 introduced

F09827 - Specific phenotypes were NOT observed.
F25326 - seed::decreased width

Mutant lines with disrupted or induced

5 mutant lines found