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  3. RAFL05-07-L01

RAFL05-07-L01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00925)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-L01 - full reading 
CTGCCTTTCC TCTTTCTCTC TCTCTATCTA TCAAACACTA GACTTGAAGA 
AATGCAGTGA AATTGAAATT GAGTAGAAGC AGAAGAGAAT ATGGTGGTAA 
GGAAGGTGGG CAAGTATGAA TTAGGTAGAA CAATCGGCGA AGGTACTTTC 
GCTAAAGTCA AGTTCGCTCA GAATACAGAG ACCGGTGAGA GCGTCGCCAT 
GAAAATCGTG GATCGTAGCA CAATCATCAA GCGCAAGATG GTGGATCAGA 
TTAAGAGAGA GATCTCGATT ATGAAGCTTG TTCGTCATCC TTGTGTTGTT 
CGTCTTTATG AGGTTCTAGC AAGCCGTACA AAGATTATAT CATCCTGGAG 
TACATTACTG GTGGTGAACT GTTTGATAAG ATTGTTCGTA ATGGACGACT 
TAGTGAGTCA GAAGCTAGGA AATACTTTCA CCAGCTTATT GATGGAGTTG 
ATTACTGTCA TAGTAAAGGT GTTTACCACA GAGATCTAAA GCCGGAAAAT 
CTTCTGTTGG ATTCTCAAGG AAATCTCAAG ATATCTGATT TTGGCCTCAG 
TGCATTACCT GAACAAGGAG TTACCATCCT AAAGACAACA TGTGGAACTC 
CCAATTACGT TGCTCCTGAG GTTCTCAGTC ACAAGGGTTA CAATGGTGCC 
GTTGCAGATA TTTGGTCCTG TGGGGTCATC CTTTATGTTC TTATGGCAGG 
ATATCTTCCA TTTGATGAAA TGGATCTACC AACTTTATAT AGTAAGATCG 
ACAAAGCTGA GTTCTCTTGC CCCTCATATT TTGCCCTGGG GGCAAAGTCC 
TTGATTAATA GAATTTTGGA TCCAAATCCA GAAACTCGGA TTACAATTGC 
AGAAATCAGG AAAGATGAGT GGTTTCTAAA GGATTACACT CCTGTACAAC 
TTATCGATTA CGAACATGTA AACCTGGATG ATGTATATGC TGCTTTTGAT 
GATCCGGAGG AACAAACATA TGCACAGGAT GGAACAAGAG ACACAGGTCC 
ACTAACTCTA AATGCGTTTG ACCTAATTAT TCTATCTCAG GGCTTGAACC 
TCGCAACTCT TTTTGACCGT GGAAAGGACT CCATGAAGCA CCAGACAAGG 
TTCATCTCAC ACAAGCCAGC AAACGTGGTT CTCTCAAGCA TGGAAGTTGT 
GTCACAGTCT ATGGGCTTTA AGACACACAT TCGTAATTAC AAGATGAGAG 
TGGAAGGATT ATCTGCAAAT AAGACATCTC ATTTCTCCGT CATACTAGAA 
GTCTTCAAAG TTGCACCATC AATTCTCATG GTAGACATTC AAAATGCAGC 
AGGAGACGCA GAAGAATACC TTAAGTTCTA CAAGACTTTT TGTAGTAAGC 
TTGATGACAT CATTTGGAAG CCGCCAGATG CATCTATGAG AAATCGAGTC 
ACCAAGGCCA AGAGTAAAAG ACGTTGAATC CACGTGCGTG GTATTCAAGC 
AGAGCTTTCA CAGAAGACAG TTAGAAACAA TATTTAACTC TCTGTGTTTC 
TTAAGTGCTT TAGTCGAGTG AATATGTACA AGCTTGTTGA TTTGGTTTTA 
ATTTATGAAT ACATAGAAGA TTGTACTAAA CTTATACGAT ATCAAGACTA 
AATTGAGTGA AAATTGCTTA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT4G24400.1 [+] show detail - CBL-interacting protein kinase 8
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
HMMPanther SERINE/THREONINE PROTEIN KINASE 2.1e-16
HMMPanther CBL-interacting protein kinase 4.3e-164
HMMPanther Calcium/calmodulin-dependent protein kinase-like 4.3e-164
HMMSmart Serine/threonine-protein kinase domain 9.1e-49
HMMSmart Tyrosine-protein kinase, catalytic domain 8.8e-06
HMMPfam Serine/threonine-protein kinase-like domain 8.8e-14
HMMPfam Serine/threonine-protein kinase-like domain 1e-52
HMMPfam NAF domain 5.1e-20
superfamily Protein kinase-like domain 4.2e-20
superfamily Protein kinase-like domain 9.2e-64
ProfileScan Protein kinase, catalytic domain 14.521
ProfileScan Protein kinase, catalytic domain 39.707
ProfileScan NAF/FISL domain 11.802
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
Gene3D no description 1.3e-19
Gene3D no description 1.3e-62

See the detailed result >

AT4G24400.1

Model type
Protein coding
Short Description
CBL-interacting protein kinase 8
Curator Summary
Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. Regulates the low-affinity phase of the primary nitrate response.
Computational Description
CBL-interacting protein kinase 8 (CIPK8); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, response to nitrate, root development, response to glucose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G35410.1); Has 132292 Blast hits to 130130 proteins in 4671 species: Archae - 192; Bacteria - 15224; Metazoa - 49173; Fungi - 13311; Plants - 31935; Viruses - 538; Other Eukaryotes - 21919 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-L01 introduced

  • F09207 - Specific phenotypes were NOT observed.
  • F26128 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found