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  3. RAFL05-07-L13

RAFL05-07-L13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01173)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-L13 - full reading
AAAGAGTTCT CCTACAATTT TCCTAAATTC TTGGATTTGA GATTTCACTT 
TTTCCGATTT GAAACAATGA TGATAACTCG CGGTGGAGCC AAGGCGGCGA
AATCGCTGTT AGTGGCGGCT GGACCACGTT TGTTCTCGAC GGTCCGTACG
GTTTCGTCTC ACGAGGCTTT ATCAGCAAGC CATATTTTGA AGCCTGGTGT
TACATCTGCT TGGATATGGA CTAGAGCTCC GACGATTGGA GGTATGAGAT
TCGCTAGCAC GATCACTCTG GGAGAGAAAA CTCCGATGAA GGAGGAGGAC
GCGAATCAGA AGAAAACAGA GAACGAATCC ACCGGTGGAG ACGCCGCCGG
AGGTAATAAC AAGGGAGATA AAGGAATCGC GAGCTATTGG GGTGTTGAAC
CTAATAAGAT TACTAAAGAA GATGGTTCTG AATGGAAGTG GAACTGTTTC
AGGCCATGGG AAACGTATAA AGCTGATATA ACGATAGATC TGAAGAAGCA
TCATGTTCCA ACGACGTTTC TTGATAGAAT AGCTTATTGG ACTGTTAAAT
CTCTTCGTTG GCCTACCGAT TTGTTCTTCC AGAGGAGATA TGGATGTCGA
GCTATGATGC TTGAAACTGT AGCAGCAGTA CCTGGAATGG TTGGAGGAAT
GTTACTACAC TGCAAATCGC TTCGACGTTT TGAGCAAAGT GGAGGATGGA
TTAAGGCTCT TCTTGAGGAA GCAGAGAATG AGAGAATGCA TCTTATGACA
TTCATGGAAG TCGCGAAACC GAAATGGTAC GAGAGAGCGC TCGTGATCAC
TGTGCAAGGA GTCTTCTTCA ACGCTTATTT CCTTGGTTAC TTAATCTCTC
CCAAGTTTGC TCATCGTATG GTTGGGTACC TTGAAGAAGA AGCGATCCAT
TCTTATACTG AGTTTCTCAA GGAACTTGAC AAAGGTAACA TTGAGAATGT
TCCTGCTCCG GCTATTGCTA TTGATTACTG GAGGCTTCCT GCTGATGCGA
CACTTCGTGA TGTTGTGATG GTTGTTCGTG CTGACGAGGC TCATCACCGT
GATGTAAACC ATTTTGCATC TGATATTCAC TACCAAGGTC GTGAACTAAA
GGAAGCTCCA GCTCCAATTG GGTATCATTG ATTCGATTAA AAGAAGAGCT
TTTTCTCAAG TTTAAAACTT TGTTCTAAAG AATTTAAGTT CTTTGACTTG
TATATACATC ATCACCTCTG CTTAAGCCAT ACTTGGATTC GGCTTTCTTT
GAATGTTGCT ACGAATGTTC TGATTTCTTC TTTACTTTTC CTGTCAATGG
GCTTTTGGGC TTATCTTTTG CTATTGTATG GCCTTGCTAT TTAGAATGAG
AGTAATAGTT TGTAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT3G22370.1 [+] show detail - alternative oxidase 1A
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Alternative oxidase 2.5e-87
HMMPIR Alternative oxidase 5.7e-157

See the detailed result >

AT3G22370.1

Model type
Protein coding
Short Description
alternative oxidase 1A
Curator Summary
Encodes AOX1a, an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. AOX1a also functions as a marker for mitochondrial retrograde response.
Computational Description
alternative oxidase 1A (AOX1A); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, cellular respiration, response to cold, response to stress, mitochondria-nucleus signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: alternative oxidase 1B (TAIR:AT3G22360.1); Has 1299 Blast hits to 1299 proteins in 245 species: Archae - 0; Bacteria - 109; Metazoa - 12; Fungi - 194; Plants - 380; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-L13 introduced

  • F23702 - Specific phenotypes were NOT observed.
  • F27240 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found