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RAFL05-07-M02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01149)

full reading [+] show sequence

Nucleotide sequence: RAFL05-07-M02 - full reading 
ACGCTGTTGA ATCACTGAAG AGAGAAAGCT TGAAGACGGC GAGAGCTCCA 
TCTTTTCTCA GGCATCTCTT ATCTTCAAAT CACAATGTCT CTGGTTGCAA 
ATGAGGAGTT TCAGCACATT TTGCGTGTGC TCAACACTAA CGTTGATGGT 
AAGCAAAAGA TTATGTTTGC CCTTACCTCT ATCAAAGGTA TTGGAAGGAG 
ATTGGCCAAC ATTGTCTGCA AGAAAGCCGA TGTCGACATG AACAAGAGGG 
CTGGTGAGTT ATCTGCAGCT GAGATTGACA ACCTCATGAC TATTGTTGCA 
AACCCAAGAC AGTTCAAGAT TCCAGACTGG TTTTTGAACA GACAGAAAGA 
TTACAAGGAT GGGAAGTACT CTCAAGTTGT CTCCAATGCC CTTGACATGA 
AGCTCAGGGA TGATCTTGAG CGTCTCAAGA AAATCAGAAA CCATCGTGGT 
CTGAGACATT ACTGGGGTCT CCGTGTTCGT GGACAACACA CCAAGACAAC 
TGGTCGCAGA GGAAAGACTG TTGGTGTGTC TAAGAAGCGT TAAGCCAATG 
TTGCTAGTTG CAGCTGGATT GGATCTTTGA TAAGGACTGA ATTTTAAATT 
TTGTTGTTCG TACAATTTTG CACGACTCGA TTTTGGGTCT TTTGTGAGAG 
ATCTTCTCTA CTGTCATATT GCTTTTAAGA TAATGTTGCT TACTGGATCT 
TATGTCACCT CTCTAGTTAC ATCATCTTTC GGTTGGCCTA TTTAAAAAAA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT1G34030.1 [+] show detail - Ribosomal protein S13/S18 family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribosomal protein S13-like, H2TH 2.6e-37
HMMPanther 40S RIBOSOMAL PROTEIN S18 5.4e-114
HMMPanther 30S/40S RIBOSOMAL PROTEIN 5.4e-114
PatternScan Ribosomal protein S13, conserved site 0
HMMPIR Ribosomal protein S13 8e-70
ProfileScan Ribosomal protein S13 35.304
HMMPfam Ribosomal protein S13 2.5e-42
Gene3D no description 4.9e-12
Gene3D no description 8.1e-05

See the detailed result >

AT1G34030.1

Model type
Protein coding
Short Description
Ribosomal protein S13/S18 family
Computational Description
Ribosomal protein S13/S18 family; FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: S18 ribosomal protein (TAIR:AT4G09800.1); Has 7956 Blast hits to 7953 proteins in 2911 species: Archae - 236; Bacteria - 5065; Metazoa - 352; Fungi - 176; Plants - 401; Viruses - 0; Other Eukaryotes - 1726 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-07-M02 introduced

  • F03006 - Specific phenotypes were NOT observed.
  • F03118 - Specific phenotypes were NOT observed.
  • F22212 - rosette leaf::abnormal / sporophyte vegetative stage::decreased speed / stem::abnormal / rosette leaf::dark green / rosette leaf::decreased size / cauline leaf::abnormal / stem::present in fewer numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found