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RAFL05-08-A02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00953)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-A02 - full reading 
AGTCAGCTCC GAGTCTGCGT TTTACTTCTT CTCCTTGAGT TTCTTCTTCT 
AGATCTGATC GCGAATCACC AAAAGGTTTT ATTTTATACA ATGGGTCGTG 
GAAACAGCTG TGGTGGAGGT CAAAGCTCAT TGGATTATCT CTTTGGTGGT 
GACGCTCCTG CTCCTAAGCC AGTTCCAGCT CCTCGTCCCG CTCCTACTGA 
GTCTAACAAC GGACCTGCAC CACCAGTAAC AGCTGTGACT GCAACCGCAC 
TCACGACTGC TACTACTTCT GTTGAGCCTG CAGAGCTTAA CAAGCAGATT 
CCTGCTGGTA TCAAAACTCC TGTTAACAAC TATGCCAGAG CTGAAGGACA 
GAACACCGGC AACTTCCTCA CTGACCGTCC TTCGACCAAA GTTCACGCAG 
CTCCGGGAGG AGGATCATCC TTGGATTATC TCTTCACTGG TGGCAAGTAA 
AATAATTGCA AAGACCTTTA TCTATCCATT GTCTTTGCTG CGTTATCTCA 
CTATGAAACT GTTTGATGTG AGCCTTTAAA TGATAAGAAG TCGGTTTCTT 
GTCTCAACTC TTATCTGTAA TATTTTGCTG AAAAAATGTT TGAATCAAAA 
ACTTCCCAAC TTGTCTCAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT2G03680.1 [+] show detail - spiral1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G03680.1

Model type
Protein coding
Short Description
spiral1
Curator Summary
The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle.
Computational Description
SPIRAL1 (SPR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anisotropic cell growth, unidimensional cell growth; LOCATED IN: spindle microtubule, cortical microtubule, transverse to long axis, preprophase band, phragmoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like2 (TAIR:AT1G69230.2); Has 191 Blast hits to 165 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 6; Plants - 146; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-A02 introduced

  • F14842 - Specific phenotypes were NOT observed.
  • F15836 - rosette leaf::dark green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::decreased size / stem::desaturated green / cauline leaf::abnormal / whole plant::decreased height / rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::desaturated green / cauline leaf::abnormal / whole plant::decreased height / fruit::abnormal
  • F18902 - rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::abnormal
  • F21246 - Specific phenotypes were NOT observed.
  • F25649 - Specific phenotypes were NOT observed.
  • F26618 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found