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RAFL05-08-C13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01086)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-C13 - full reading 
AGAAATCGAT TTCCAAAATG GCTCTTGTTC AATCCAGAAC TTTTCCACAC 
CTCAACACTC CGTTATCGCC GATTCTATCC TCCCTCCATG CTCCGTCTTC 
TCTCTTTATC CGGAGGGAAA TCCGACCGGT AGCCGCGCCG TTCTCCTCCT 
CCACCGCCGG AAACTTGCCC TTCTCGCCGT TGACGCGTCC GCGAAAGCTT 
CTCTGTCCTC CGCCTCGCGG CAAGTTTGTC AGAGAAGATT ATCTTGTGAA 
GAAATTGTCA GCTCAAGAAC TTCAGGAACT GGTGAAAGGA GATAGGAAGG 
TGCCGTTGAT TGTTGATTTT TATGCGACAT GGTGTGGACC TTGTATCTTG 
ATGGCCCAGG AACTAGAAAT GCTTGCAGTA GAGTATGAGA GCAATGCAAT 
AATCGTGAAA GTTGATACAG ATGATGAGTA CGAGTTTGCA CGCGACATGC 
AGGTTCGAGG GTTACCTACA TTATTCTTCA TCAGTCCTGA CCCAAGCAAA 
GATGCAATCA GGACAGAAGG GCTAATTCCG TTACAGATGA TGCACGATAT 
CATTGACAAC GAGATGTGAA GTTTTTACTG AGAAAACACT TTTGTACTCT 
TTATGATTTG ATTAGAATCG CCGTAATTTA GGATTGGTAC CGTGTTGTTT 
GCATTTGAGA TGTGGTAAGA ATGTCTTCTA GTTTCATAGA TGAAGAATGT 
AGTCTTAAGA CATTTGTTTG TATGCAGTGT TCGTTTCAAT ACCTAAGTGA 
AAAGGTTAGA GCTGTTGATC TGGTCGGATC CAAGTTATGT GGCACATCGA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G06730.1 [+] show detail - Thioredoxin z
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Thioredoxin-like 12.892
HMMPfam Thioredoxin domain 1.2e-19
superfamily Thioredoxin-like fold 2.3e-26
FPrintScan Thioredoxin-like subdomain 4.3e-05
FPrintScan Thioredoxin-like subdomain 4.3e-05
FPrintScan Thioredoxin-like subdomain 4.3e-05
HMMPanther THIOREDOXIN T,DEADHEAD(D.MELANOGASTER)-RELATE 6.9e-32
HMMPanther Thioredoxin, core 6.9e-32
Gene3D Thioredoxin fold 1.7e-20

See the detailed result >

AT3G06730.1

Model type
Protein coding
Short Description
Thioredoxin z
Curator Summary
Encodes a plastidial thioredoxin (TRX) isoform that defines a branch of plastidial TRXs lying between x- and y-type TRXs and thus was named TRX z. Possesses disulfide reductase activity in vitro. TRX z was previously named as Trx p (thioredoxin putative and plastidic) before its thioredoxin activity was confirmed (Meng et al., PNAS 2010, 107:3900). Knockout mutant of TRX z has a severe albino phenotype and is inhibited in chloroplast development. Two fructokinase-like proteins (FLN1 and FLN2), members of the pfkB-carbohydrate kinase family, are potential TRX z targets.
Computational Description
Thioredoxin z (TRX z); FUNCTIONS IN: protein-disulfide reductase activity, protein disulfide oxidoreductase activity; INVOLVED IN: plastid organization, cell redox homeostasis; LOCATED IN: thylakoid, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y2 (TAIR:AT1G43560.1); Has 15064 Blast hits to 14650 proteins in 2900 species: Archae - 204; Bacteria - 8491; Metazoa - 1613; Fungi - 754; Plants - 1355; Viruses - 0; Other Eukaryotes - 2647 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-C13 introduced

  • F05615 - rosette leaf::decreased size / cauline leaf::decreased size / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in greater numbers in organism
  • F08017 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found