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RAFL05-08-E12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01117)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-E12 - full reading 
AACACACTTG AACACTACTT TCGAACTCTC TCTTTATCTC TCTTGCAATG 
AAGCTCTCTA TGCGTTTGAT CTCAGCTGTT CTCATCATGT TCATGATATT 
CGTCGCCACT GGGATGGGAC CAGTCACTGT GGAGGCACGC ACTTGTGAGT 
CGCAGAGCCA TAGATTCAAG GGTACATGCG TGAGTGCATC AAACTGCGCC 
AACGTGTGCC ACAACGAAGG CTTTGTCGGA GGTAACTGCC GTGGATTCCG 
TCGTCGTTGC TTCTGCACCA GACATTGCTG ATCTACCCAT TCTCATGCAT 
AATTCAAGCT TTGATCCATC GTCGTGTGTC ACTTCTTTCT TATCTAATCT 
TCCGTACAGT ACCATGAAGT ACCGTACATT AGTGTGTTCT CAAATAAGTC 
TTTGGATTTG TGTGTTTCCG GTTTAAATGT AATGTTAAAT CAACTAATGA 
CTTTGAGCCT TTGACTAGTA ATAATCAAAA TCTATGTTCT GAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT2G02100.1 [+] show detail - low-molecular-weight cysteine-rich 69
    E-value: 0; Score: 99.80

 

InterPro Scan Digest

Program Description E-value
HMMSmart Knottin 4.1e-11
Gene3D no description 1.5e-15
HMMPfam Gamma thionin 2e-17
PatternScan Gamma thionin 0
FPrintScan Gamma Purothionin 2.7e-10
FPrintScan Gamma Purothionin 2.7e-10
superfamily Scorpion toxin-like 2.2e-14

See the detailed result >

AT2G02100.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 69
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 69 (LCR69); FUNCTIONS IN: peptidase inhibitor activity; INVOLVED IN: defense response; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614), Gamma Purothionin (InterPro:IPR008177); BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 68 (TAIR:AT2G02130.1); Has 400 Blast hits to 400 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 400; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-E12 introduced

  • F19851 - Specific phenotypes were NOT observed.
  • F21101 - Specific phenotypes were NOT observed.
  • F24030 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found