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RAFL05-08-F21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01093)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-F21 - full reading 
AAATCCCGAT TCCGAGAGAG AGAGAGCGAT AGCGGAAGAC GATGGCTTTG 
ACGGTGGCGA AGAGTGCGTT GGAGGCGATT AGAGAGAAAG GTCTCGGCGG 
TTTCATGAGG ATGATCCGAG AAGAAGGCTT CATGAGATGC CTACCAGATG 
GGAACCTCTT GCAAACTAAA ATACATAACA TAGGAGCGAC ACTTGTTGGT 
GTTGACAAGT TCGGTAACAA ATACTACCAG AAGCTAGGCG ATACTCAATA 
CGGTAGGCAC AGATGGGTAG AGTATGCTTC AAAGGATCGT TACAACGCAT 
CTCAAGTACC AGCTGAATGG CACGGGTGGC TTCATTTCAT CACTGATCAC 
ACTGGCGATG AGCTCTTGAG TTTGAAACCA AAAAGGTATG GGCTTGAGCA 
TAAAGAGAAC TTCTCTGGAG AAGGTGATGC ATACATCTAC CATTCGAAGG 
GACATACCTT GAACCCGGGA CAAAAGAACT GGACTCGGTA CCAATCATGG 
GTACCCACCA AGACTCAGTA AGAAGATGAT ATTTTGGTTT TACGCTCTGC 
GAGACTTTCT CTCGAGTGAT TTGTTGTTTT GTTTCTGTGT CATTTTAATA 
AAAGCTGTCT TGGATCTAAA GCTGGACAAT TGGGTTTCGG ATCTGGAATT 
GTAATTGTTA CTGTGTAATA ATTTGCTGAT TATTAAGTTT CTTGTTTCTT 
CAAATAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G03100.1 [+] show detail - NADH:ubiquinone oxidoreductase, 17.2kDa subunit
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam NADH:ubiquinone oxidoreductase, 17.2kDa subunit 2.9e-29
HMMPanther NADH:ubiquinone oxidoreductase, 17.2kDa subunit 6.8e-38

See the detailed result >

AT3G03100.1

Model type
Protein coding
Short Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit
Computational Description
NADH:ubiquinone oxidoreductase, 17.2kDa subunit; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, 17.2kDa subunit (InterPro:IPR007763); Has 1526 Blast hits to 1526 proteins in 350 species: Archae - 0; Bacteria - 415; Metazoa - 153; Fungi - 83; Plants - 51; Viruses - 0; Other Eukaryotes - 824 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-F21 introduced

  • F13427 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found