1. Home
  2. Full-length cDNAs
  3. RAFL05-08-I06

RAFL05-08-I06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01189)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-I06 - full reading 
ATATCAAACT TCAAAAGCGT CAAACATAAA GTTAGGCCAA GAAACCCATT 
TAAAAAAAAA AAGAGAGAGA GATGGAGAGT TTCCCGATCA TCAATCTCGA 
GAAGCTTAAT GGAGAAGAGA GAGCAATCAC TATGGAGAAG ATCAAAGACG 
CTTGTGAAAA CTGGGGCTTC TTTGAGTGTG TGAACCATGG GATTTCACTC 
GAGCTTTTGG ACAAAGTGGA GAAGATGACC AAGGAACATT ACAAGAAGTG 
CATGGAAGAG AGATTCAAGG AATCGATTAA GAACAGAGGT CTTGACTCTC 
TTCGCTCTGA AGTCAACGAC GTTGACTGGG AATCCACTTT CTACCTCAAG 
CACCTTCCCG TCTCTAATAT CTCCGATGTC CCTGATCTCG ACGACGATTA 
CAGAACGTTA ATGAAAGACT TCGCCGGAAA GATAGAGAAG TTGTCGGAGG 
AGCTACTGGA TCTGCTGTGC GAGAATCTCG GTTTAGAGAA GGGTTATTTA 
AAAAAGGTGT TTTACGGGTC GAAAAGACCG ACTTTTGGAA CCAAAGTCAG 
CAATTATCCA CCTTGTCCTA ATCCGGACCT AGTCAAGGGT CTCCGAGCCC 
ACACCGACGC CGGCGGCATC ATCCTCCTCT TCCAAGACGA CAAAGTCAGT 
GGACTTCAGC TTCTTAAAGA CGGCGAGTGG GTCGATGTTC CTCCGGTTAA 
GCATTCAATC GTCGTTAATC TCGGCGATCA ACTTGAGGTG ATAACCAATG 
GGAAGTACAA GAGTGTGGAA CATAGAGTGC TATCTCAGAC AGACGGAGAA 
GGAAGAATGT CGATCGCATC ATTCTATAAT CCGGGAAGCG ACTCTGTTAT 
TTTTCCGGCG CCGGAGCTGA TCGGAAAAGA AGCAGAGAAG GAGAAGAAAG 
AGAACTATCC GAGATTTGTG TTTGAAGATT ACATGAAACT CTGCTCTGCT 
GTCAAGTTTC AGGCCAAGGA ACCAAGGTTT GAAGCCATGA AAGCTATGGA 
GACAACTGTG GCCAACAATG TTGGACCATT GGCCACTGCG TGAATGATAT 
GTAACTGGTT AATAAATATA TATATATATA TATATATAGT CTTTATATAA 
TGTCTTAGAA ACTTGATTAT TCACTATACG AATAATTTTG TTCATGTTGT 
TGTATGTTTA AGTGGTGAAT GTGTTTTATA TATGGGAATT AATGTTTTCT 
GTTCCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G05010.1 [+] show detail - ethylene-forming enzyme
    E-value: 0; Score: 99.75

 

InterPro Scan Digest

Program Description E-value
superfamily Clavaminate synthase-like 4.3e-91
HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 2.9e-207
HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 2.9e-207
HMMPfam Oxoglutarate/iron-dependent oxygenase 1.8e-23
Coil coiled-coil 0
Gene3D no description 3.8e-92

See the detailed result >

AT1G05010.1

Model type
Protein coding
Short Description
ethylene-forming enzyme
Curator Summary
Encodes 1-aminocyclopropane-1-carboxylate oxidase
Computational Description
ethylene-forming enzyme (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8587 Blast hits to 8552 proteins in 1009 species: Archae - 0; Bacteria - 1142; Metazoa - 103; Fungi - 1035; Plants - 4924; Viruses - 0; Other Eukaryotes - 1383 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-I06 introduced

  • F06716 - seed::increased size / seed::increased length
  • F21634 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found