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Full-length cDNAs
RAFL05-08-J06

RAFL05-08-J06

RIKEN Arabidopsis Full-length cDNAs

ACGACGCGTT TCCGCTCACT AATTTTTTTT AACCTTTTTG TGTCTCCGTC 
GTCTTTTGAT CTTCAATCTC AGTTTTGAGC TGAAGATTAT CGTATCGACC 
TGCGATTCTC TTCAGATCGA TAATCCATGG CTGCAGCTGG AAACAAGAGC 
ATTAACGCCA AATTGGTGTT GCTTGGAGAT GTTGGTGCTG GAAAATCAAG 
TCTTGTGTTA CGGTTTGTCA AAGATCAGTT TGTTGAATTC CAGGAATCAA 
CCATTGGTGC TGCTTTTTTC TCACAAACGT TAGCTGTGAA CGATGCCACT 
GTGAAGTTTG AGATTTGGGA TACAGCGGGT CAGGAACGGT ACCATAGTTT 
GGCTCCAATG TACTACAGAG GTGCTGCTGC TGCAATCATT GTTTTTGATG 
TTACGAATCA GGCTTCGTTT GAGAGGGCAA AGAAATGGGT TCAGGAACTG 
CAGGCACAAG GTAACCCTAA TATGGTCATG GCCCTTGCTG GAAACAAATC 
TGATTTATTA GATGCAAGGA AGGTGACAGC AGAGGATGCA CAAACATATG 
CTCAGGAAAA CGGTCTTTTC TTCATGGAAA CTTCAGCAAA AACCGCTACT 
AATGTCAAAG AGATATTCTA TGAAATCGCA AGAAGGCTAC CGCGAGTACA 
GCCAACAGAA AACCCAACAG GAATGGTTCT GCCAGACAGG GCCATGGATA 
GGGCAGTGAG CTCATCTTGT TGTGCTTAGT TATATTGTGT AATGGCACAC 
ACTTCTCTTA AAAAGAGATC TTTTGGTCAC TTTAAAGTTA TGGACTTCTG 
TGTTTGCGTC TCTTTGCTTT GTTTTACGTA TTTGAGATTT GATCTCCACT 
ATTTTGTAAA TAAATCTAAT ACTCAACTAA GTAACTAAGT GCGTGAGGGG 
GCAAAAAAAA AAAAAAAA

Gene models with high sequence identity

AT4G19640.1 [+] show detail - Ras-related small GTP-binding family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Ras GTPase	2.4e-37
FPrintScan	Ras GTPase	2.4e-37
FPrintScan	Ras GTPase	2.4e-37
FPrintScan	Ras GTPase	2.4e-37
FPrintScan	Ras GTPase	2.4e-37
HMMTigr	Small GTP-binding protein	1e-25
ProfileScan	Small GTPase	33.382
Gene3D	no description	7.2e-59
superfamily	P-loop containing nucleoside triphosphate hyd	2.2e-58
HMMPanther	Rab5-related	4.3e-78
HMMPanther	RAS-RELATED GTPASE	4.3e-78
HMMSmart	Ras small GTPase, Ras type	1.8e-29
HMMSmart	Ras small GTPase, Rab type	9.9e-80
HMMSmart	Small GTPase, Rho type	1.2e-11
HMMSmart	Ran GTPase	1.9e-07
HMMPfam	Ras	1.9e-60

See the detailed result >

AT4G19640.1

Model type: Protein coding
Short Description: Ras-related small GTP-binding family protein
Curator Summary: Encodes Ara7.
Computational Description: ARA7; FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab5-related (InterPro:IPR015599); BEST Arabidopsis thaliana protein match is: RAB homolog 1 (TAIR:AT5G45130.1); Has 26416 Blast hits to 26384 proteins in 719 species: Archae - 27; Bacteria - 133; Metazoa - 13862; Fungi - 3690; Plants - 2969; Viruses - 20; Other Eukaryotes - 5715 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL05-08-J06 introduced

F16329 - Specific phenotypes were NOT observed.
F17435 - Specific phenotypes were NOT observed.
F23646 - stem::present in greater numbers in organism / stem internode::decreased length

Mutant lines with disrupted or induced

5 mutant lines found