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  3. RAFL05-08-M19

RAFL05-08-M19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07259)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-M19 - full reading 
GTGGGAACGA AGTAGACTTA AACTATTCAG GAAAAAAAAA ATTCTCTATT 
ATTGAACAAA GTAGACTTAA AAAAAACATT TCAATCAGAT GGAGAAAGCT 
TGTGGTGATG ATAGGTCCCG CTTACTCAGG AAGATTTCAA CGGAAAGCAA 
GGTAATAGTC TAGACTCTAG AATGGATCTT CTTCAGCTGC TCCTAGATTG 
ACGATCTCAT ACTCGCATAT CCAGAAACCA TCCTACTCTC CCTTTGATTT 
TGATCCTCGG TGCTTTAGCC GTTCGAGAAA GAGAGCAATT TTCACTTCCG 
GCCTCGTATT CTTCGGGATC TCGGACTCAA TCATCGGGAA CAAGGCGACT 
TCCGCCGACT GATGAAGAAC GAGTCTCGGA CATCTGAAGA AATCAGGTAA 
ATCGGAGGAT GTT

Gene models with high sequence identity

  1. AT4G03500.1 [+] show detail - Ankyrin repeat family protein
    E-value: 0; Score: 99.75

 

InterPro Scan Digest

See the detailed result >

AT4G03500.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein
Computational Description
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03460.1); Has 38634 Blast hits to 17459 proteins in 653 species: Archae - 49; Bacteria - 2374; Metazoa - 20314; Fungi - 3164; Plants - 3215; Viruses - 213; Other Eukaryotes - 9305 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-M19 introduced

  • F05336 - Specific phenotypes were NOT observed.
  • F05337 - Specific phenotypes were NOT observed.
  • F05342 - Specific phenotypes were NOT observed.
  • F08001 - seed::decreased length

Mutant lines with disrupted or induced

10 mutant lines found