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RAFL05-08-N01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda00918)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-N01 - full reading 
GGGAAAGAGC AGAAGAAATT TGCAGAAGAG AGAAAAACAA AAATGGCGGT 
TCTTTGCTCG TCTTCGACGG TGATACTCTC TTCTTCTTCC GTGAAATCCT 
CCGGAAGTGA GAGAAAGTCT CCGTTTTTAG GGTTCTCTTT AACGGCTATC 
TCGAAGCCGT CGGTACGAGT CGGCATTTAT GCGAATTCGA AAAGAGGATT 
GCAAGTGAAG TGTGAAGCTG AGCCGACGAC GACGACTTCT CTTGTTCCGG 
CGAATCAACG ATGGATGTTC GACGAAGAAG AAGCTAATGG CCCTGACATC 
TGGAACACGA CATGGTATCC AAAAGCTTCA GACCATGTGA ACACGGACAA 
GCCCTGGTTT GTGGTTGATG CAACTGACAA AATTCTTGGT AGATTGGCAT 
CGACAATTGC TAATCACATC CGTGGGAAGA ATCTTGCCTC TTACACTCCT 
AGTGTCGACA TGGGAGCTTT TGTGATTGTG GTGAATGCTG AGAAAGTTGC 
TGTATCTGGA AAGAAGCGTA ACCAAAAGCT GTACAGGAGG CATTCAGGAC 
GACCTGGTGG TATGACAGTA GAGACATTTG ATCAATTGCA GCAGAGAATT 
CCTGAAAGAA TCGTTGAGCA TGCTGTTCGT GGAATGCTTC CAAAGGGACG 
GCTTGGGAGA GCTCTGTTCA ATCACCTGAA GGTGTACAAA GGCCCTGACC 
ATCCTCACGA GGCCCAGAAA CCGCTTGATC TGCCTATCAG GGACAAGAGA 
ATACAGCTGC AAAAATAGAA GCTCCACCAC TGTTCCATTA TCGCCAAGCG 
CAGAGAGTTT TTTCTTCTCA GGTTTCTGTA GTTTCTTCAT CCCAAAACCA 
GAGGAGGCTT TACAGATTCT TGTTTTCGCT TCTATCAACT CTGTTATGCT 
ACAAAACTTT CTAATTTGAA ATATTTCTCG TTATTTTTTT TTGCCAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G78630.1 [+] show detail - Ribosomal protein L13 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Ribosomal protein L13, bacterial-type 6.9e-76
superfamily Ribosomal protein L13 1.3e-43
PatternScan Ribosomal protein L13 0
HMMPfam Ribosomal protein L13 5.1e-50
HMMPanther Ribosomal protein L13, bacterial-type 9.7e-116
HMMPanther Ribosomal protein L13 9.7e-116
Gene3D Ribosomal protein L13 4.4e-39

See the detailed result >

AT1G78630.1

Model type
Protein coding
Short Description
Ribosomal protein L13 family protein
Computational Description
embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-N01 introduced

  • F00410 - Specific phenotypes were NOT observed.
  • F03609 - Specific phenotypes were NOT observed.
  • F06916 - rosette leaf::variegated / sporophyte vegetative stage::decreased speed / rosette leaf::desaturated green / rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::decreased size / stem::desaturated green / cauline leaf::epinastic / cauline leaf::desaturated green / cauline leaf::abnormal / whole plant::decreased height / fruit::abnormal
  • F08323 - Specific phenotypes were NOT observed.
  • F22313 - Specific phenotypes were NOT observed.
  • F26746 - stem::desaturated green / stem::abnormal / fruit::abnormal / rosette leaf::desaturated green / fruit::abnormal
  • F27225 - rosette leaf::desaturated green / cauline leaf::present in fewer numbers in organism / stem::desaturated green / stem::abnormal / cauline leaf::desaturated green / fruit::abnormal

Mutant lines with disrupted or induced

12 mutant lines found