1. Home
  2. Full-length cDNAs
  3. RAFL05-08-P17

RAFL05-08-P17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01087)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-P17 - full reading 
ATCACACAGC TCTTGAAAAC CATCTTAAAG CAACTCAAAG CTCAAATCGA 
AATTTCTAGT TTCTCTTTAT CATTCACGCT AAGTGTTCAA TCGAATCAAG 
ATTAAGTATG GCAGAAGAGT ACAAGAACAC CGTTCCAGAG CAGGAGACCC 
CTAAGGTTGC AACAGAGGAA TCATCGGCGC CAGAGATTAA GGAGCGGGGA 
ATGTTCGATT TCTTGAAGAA AAAGGAGGAA GTTAAACCTC AAGAAACGAC 
GACTCTCGCG TCTGAGTTTG AGCACAAGAC TCAGATCTCT GAACCAGAGT 
CGTTTGTGGC CAAGCACGAA GAAGAGGAAC ATAAGCCTAC TCTTCTCGAG 
CAGCTTCACC AGAAGCACGA GGAGGAAGAA GAAAACAAGC CAAGTCTCCT 
CGACAAACTC CACCGATCCA ACAGCTCTTC TTCCTCTTCG AGTGATGAAG 
AAGGTGAAGA CGATGAGAAG AAGAAGAAGG AGAAAAAGAA GAAGATTGTT 
GAAGGAGATC ATGTGAAAAC AGTGGAAGAA GAGAATCAAG GAGTAATGGA 
CAGGATTAAG GAGAAGTTTC CACTCGGAGA GAAACCAGGG GGTGATGATG 
TACCAGTCGT CACCACCATG CCAGCACCAC ATTCGGTAGA GGATCACAAA 
CCAGAGGAAG AAGAGAAGAA AGGGTTTATG GATAAGATCA AGGAGAAGCT 
TCCAGGCCAC AGCAAGAAAC CAGAGGATTC ACAAGTCGTC AACACCACAC 
CGCTGGTTGA AACAGCAACA CCGATTGCTG ACATCCCGGA GGAGAAGAAG 
GGATTTATGG ACAAGATCAA AGAGAAGCTT CCAGGTTATC ACGCCAAGAC 
CACTGGAGAG GAAGAGAAGA AAGAAAAAGT GTCTGGTTAA GAGAAAAATA 
TGATAAGAGT GAATAATAAT GATGTGGGAG TGGGACTTAT GTTGTTTTTT 
GTTTTTTGTT GATCATTGTC TCTTTTATTT TGTCTTTCTA GCTGTTCTCC 
AAGTTTGTGT TTAGAGTTAG ATCATTTGTG TCTAAAATCT ATAAAATTAT 
TTTATCTATG GGGTAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G20450.1 [+] show detail - Dehydrin family protein
    E-value: 0; Score: 99.81

 

InterPro Scan Digest

Program Description E-value
HMMPfam Dehydrin 1.5e-13
HMMPfam Dehydrin 3.6e-22
Coil coiled-coil 0
PatternScan Dehydrin 0
PatternScan Dehydrin 0
PatternScan Dehydrin 0

See the detailed result >

AT1G20450.1

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm.
Computational Description
EARLY RESPONSIVE TO DEHYDRATION 10 (ERD10); CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: cold-regulated 47 (TAIR:AT1G20440.1); Has 8140 Blast hits to 5021 proteins in 461 species: Archae - 16; Bacteria - 327; Metazoa - 2363; Fungi - 375; Plants - 2004; Viruses - 65; Other Eukaryotes - 2990 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-P17 introduced

  • F06142 - Specific phenotypes were NOT observed.
  • F12351 - Specific phenotypes were NOT observed.
  • F17910 - Specific phenotypes were NOT observed.
  • F19435 - Specific phenotypes were NOT observed.
  • F21718 - rosette leaf::increased length / stem::abnormal / cauline leaf::dark green / cauline leaf::abnormal / stem::present in fewer numbers in organism
  • F22504 - Specific phenotypes were NOT observed.
  • F22714 - Specific phenotypes were NOT observed.
  • F28230 - seed::increased size / seed::increased length
  • F29334 - rosette leaf::abnormal / stem::decreased thickness / stem::abnormal
  • F29935 - Specific phenotypes were NOT observed.
  • F30118 - Specific phenotypes were NOT observed.
  • F30405 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found