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RAFL05-08-P24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01074)

full reading [+] show sequence

Nucleotide sequence: RAFL05-08-P24 - full reading 
ACACATCCAA CAACAAAACA CAAGCGTAGA AAACAAAACT CAACTAATTG 
TGTTATCACC CAAAAGAGAA GAGCAAACAC AATGGCTTTC GCTTTGAGGT 
TCTTCACATG CTTTGTTTTG ACAGTGTTCA TCGTTGCATC AGTGGATGCA 
GCAATAACAT GTGGCACAGT GGCAAGTAGC TTGAGTCCAT GTCTAGGCTA 
CCTATCAAAG GGTGGGGTGG TGCCACCTCC GTGCTGTGCA GGAGTCAAAA 
AGTTGAACGG TATGGCTCAA ACCACACCCG ACCGCCAACA AGCATGCAGA 
TGCTTACAGT CCGCTGCAAA AGGGGTTAAT CCAAGTCTAG CCTCTGGCCT 
TCCTGGAAAG TGCGGTGTTA GCATCCCCTA TCCCATCTCC ACGAGCACCA 
ACTGCGCCAC CATCAAGTGA AGTGGGGAAT AACGACATCA TTTGCCTGAA 
GAGTATGGTT TCGTATACGT AAAATAAGAC GGCTATCTAA GCTGATATTT 
ACCTTGTCTT TGTTTGTCTT GATGGCTTTG TAATCTTTTG CTTTGTTATG 
TTGTATACTT GTGTCTTAAC ATGTTTAAGA TATGATAATA TATAGTATCG 
GTACCTTATT AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT5G59310.1 [+] show detail - lipid transfer protein 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 7.3e-30
HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 1.5e-15
Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 4.8e-30
FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
FPrintScan Plant lipid transfer protein/Par allergen 4.1e-22
PatternScan Plant lipid transfer protein/Par allergen 0
HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 3.5e-08

See the detailed result >

AT5G59310.1

Model type
Protein coding
Short Description
lipid transfer protein 4
Curator Summary
Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational Description
lipid transfer protein 4 (LTP4); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus, lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 3 (TAIR:AT5G59320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-08-P24 introduced

  • F06112 - Specific phenotypes were NOT observed.
  • F06741 - Specific phenotypes were NOT observed.
  • F20023 - Specific phenotypes were NOT observed.
  • F26810 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found