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  3. RAFL05-09-B06

RAFL05-09-B06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01011)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-B06 - full reading 
ACAGTGCTCT CTTTTCCACT ATCGCCATGA TTGCTCAAAC GTGAATAGAA 
TGATCTGATC CATAATCTAA AAAATTGAGC TTTCATCAGT AACCGAAGCA 
ATGGCACGGA GGTCTGGAAA TTGCATGAGA TGTCTAGTGA TATTCTCGGT 
GGTTTCAGCA TTATTAGTGT GTGGACCTGC TCTTTACTGG AAATTGAATA 
AGGGTTTCGT TGGATCTGCT CGTAGCACCA ACTCCATTTG TCCTCCTTGT 
GTCTGCGATT TTCCTCCTCC TTTGTCTCTC CTCCAGATTG CTCCCGGGCT 
TGCAAACCTC TCTATTACAG GTTGTGGCAG CGATGATCCA GAGCTCAAAG 
AGGAGATGGA GAAGCCGTTT GTGGATCTTC TCACAGAAGA GCTGAAGCTT 
CAAGAAGCAG TGGCAGACGA GCATAGTCGT CATATGAATG TTACACTTGC 
CGAAGCTAAA AGAGTTGCTT CACAGTACCA AAAGGAGGCT GAGAAGTGTA 
ACGCTGCCAC TGAAATTTGC GAATCAGCTA GAGAGAGAGC TCAAGCATTG 
TTGCTCAAAG AGCGGAAGAT CACTTTTTTG TGGGAGCGCA GAGCTCGGCA 
ATTAGGTTGG GAAGGTGAGT AAGTAATTCA CTGTTTAGTG ACTTCTTCAC 
AGTCTACTCT GACGAGTTTC TCAATGGAAG CAAACTAGAT TTTCTCTTCC 
GTATACAACT CGTGAGAACA TGGGAATCGC TTAATTCGCA AGGCAATGTT 
TTTGTCTCAC ATGTTCTCTA TATATGTAGT TCTTTTTTGT TTTGCTCTTG 
GCTCTAGACA CTGCTAAAGA AAGGGTTGGC CTTGTATTGA CTTTTTTCTT 
CAGATATATA TTTGTCAGTC ACACTGGACA AAGTAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT2G24290.1 [+] show detail - Protein of unknown function (DUF1068)
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam Protein of unknown function DUF1068 3.2e-44

See the detailed result >

AT2G24290.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1068)
Computational Description
Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT4G30996.1); Has 111 Blast hits to 111 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-B06 introduced

  • F22814 - rosette leaf::increased size / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::desaturated green / stem::abnormal
  • F28504 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found