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RAFL05-09-B08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01152)

full reading [+] show sequence

Nucleotide sequence: RAFL05-09-B08 - full reading 
ACAACACAAC TTCAGCTTTA AGACAGCTAA AACTAAATAC AAAGAAACAG 
AGATGGGTTT GGTTACAGAG GAGGTGAGAG CTAAGGCAGA GATGTACACC 
GGAGATGAGA TATGTAGAGA GAAGACAAAG TGTTTCCTCA AGGAAATATC 
TATGCCCAAT GGTTTATTAC CATTGAAGGA TATAGAAGAG GTTGGGTATG 
ACAGAGAGTC AGGTGTTGTA TGGCTGAAGC AGAAGAAGAG CATCACTCAC 
AAGTTCACAG AGATAGATAA GCTTGTCTCC TATGGAACCG AAGTCACAGC 
CATTGTTGAG ACCGGGAAAA TCAAGAAGCT CACTGGAGTC AAAGCCAAGG 
AACTTCTTAT TTGGGTCACT ATCAATGAGA TCTATACCGA GGAACCCCCT 
ACCAAGATCA CGTTCAAGAC ACCGACCACA CTGTCCAGGA CTTTCCCGGT 
CACAGCTTTT ATAGTCCCAG AAGAACCTGC CAAGGAGGAA CCTGCCAAAG 
AGGAACCTGC CAAGGAGAAG AGCAGCGAAG CCACCGAGGC CAAGGAGGCT 
GTTGCAATCA AGGAGGCTGT CGCAGTCAAA GAGGCGGCCT AATCAGCTCA 
GCTTCAGCAG ATAAAAGAGA CCCGAATTTT TAAGTGTACT TCAAGAATTT 
GAACAAATCA TGGAGAGTTA GTGTTTCTCA CTGCTCTAAC TATCATGTAT 
TATCTACCTA CCACTTGTTG CTGCTTGTTT TACCTGTAAT AAGATATCAA 
TATCATCCTG TTCCACTAAA ACTTATCCTT AATTATCTAT AAACTACAAT 
ACAGCTGGTT CTGTATGTCA CTTCAAAAAC AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G09310.1 [+] show detail - Protein of unknown function, DUF538
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF538 5.1e-27
Gene3D Protein of unknown function DUF538 2.2e-16

See the detailed result >

AT1G09310.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G56580.1); Has 409 Blast hits to 409 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 403; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL05-09-B08 introduced

  • F05426 - Specific phenotypes were NOT observed.
  • F07730 - seed::increased size / seed::increased length
  • F08633 - Specific phenotypes were NOT observed.
  • F14310 - Specific phenotypes were NOT observed.
  • F17118 - Specific phenotypes were NOT observed.
  • F19225 - Specific phenotypes were NOT observed.
  • F27450 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found